View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_high_165 (Length: 218)
Name: NF19358_high_165
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_high_165 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 14580932 - 14580731
Alignment:
| Q |
1 |
aaaaccacacactcatccctcacaatatcttcaacctcaaacatcaaatcctaacaaaaacacacacactgagaaacacattagcaatagcaatggaagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14580932 |
aaaaccacacactcatccctcacaatatcttcaacctcaaacatcaaatcctaacaaaaacacacacactgagaaacacattagcaatagcaatggaagg |
14580833 |
T |
|
| Q |
101 |
ttcagtacaaattaatgtacctgaatctcattccactattgagcaagaaaagaaaccaattttatcatgggatgtaattatagaaaaaagtttatcaaat |
200 |
Q |
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|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
14580832 |
ttcagtacaaattaatgtacttgaatctcattccaatattgagcaagaaaagaaaccaattttgtcatgggatgtaattatagaaaaaagtttatcaaat |
14580733 |
T |
|
| Q |
201 |
tt |
202 |
Q |
| |
|
|| |
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|
| T |
14580732 |
tt |
14580731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 85 - 202
Target Start/End: Original strand, 14542739 - 14542856
Alignment:
| Q |
85 |
caatagcaatggaaggttcagtacaaattaatgtacctgaatctcattccactattgagcaagaaaagaaaccaattttatcatgggatgtaattataga |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
14542739 |
caatagcaatggaaggttcagtacaaattaatgtacctgaatctcattccaatattgagcaagaaaagaaaccaattttgtcatgggatgtaattataga |
14542838 |
T |
|
| Q |
185 |
aaaaagtttatcaaattt |
202 |
Q |
| |
|
|||||||||||||||||| |
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| T |
14542839 |
aaaaagtttatcaaattt |
14542856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 81 - 202
Target Start/End: Complemental strand, 35623182 - 35623061
Alignment:
| Q |
81 |
ttagcaatagcaatggaaggttcagtacaaattaatgtacctgaatctcattccactattgagcaagaaaagaaaccaattttatcatgggatgtaatta |
180 |
Q |
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|||| |||||||||||||||| | || |||||| ||||||||||||||| ||||| ||||||||||||||| ||||||| ||||||||||||||||| | |
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| T |
35623182 |
ttagtaatagcaatggaaggtccggtgcaaattgatgtacctgaatctcgttccaatattgagcaagaaaataaaccaaggttatcatgggatgtaatca |
35623083 |
T |
|
| Q |
181 |
tagaaaaaagtttatcaaattt |
202 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
35623082 |
tagaaaaaagtttatcaaattt |
35623061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 202
Target Start/End: Complemental strand, 34264065 - 34263954
Alignment:
| Q |
85 |
caatagcaatggaaggttcagtacaaattaatgtacctgaatctcattccactattgagcaagaaaagaaaccaattttatcatgggatgtaattataga |
184 |
Q |
| |
|
||||||||||||| ||||||| |||||| | |||| | ||||||||||| | ||||| | ||||||| ||| || | ||||||||| ||| ||||| |
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|
| T |
34264065 |
caatagcaatggagggttcagcacaaatcactgtatcggaatctcattcaa---ttgaggaggaaaagacaccgatgt---catgggatgaaataataga |
34263972 |
T |
|
| Q |
185 |
aaaaagtttatcaaattt |
202 |
Q |
| |
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|||||||||||||||||| |
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|
| T |
34263971 |
aaaaagtttatcaaattt |
34263954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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