View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_high_18 (Length: 506)
Name: NF19358_high_18
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 16 - 489
Target Start/End: Complemental strand, 6213986 - 6213513
Alignment:
| Q |
16 |
tactggaggcaaatgtttcaacttcagttcattcgtaagtgcgtggctctactatctgcttatattattacttcatcaatcattaatgacataacataaa |
115 |
Q |
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| T |
6213986 |
tactggaggcaaatgtttcaacttcagttcattcgtaagtgcgtggctctactatctgcttatattattacttcatcaatcattaatgacataacataaa |
6213887 |
T |
|
| Q |
116 |
ctttggggtgtttggttgattttgtaacatccatttgtctatgtctatcaatgatcggcagatacctgcagtaaacgcgcttagggacatgcgttcattt |
215 |
Q |
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| T |
6213886 |
ctttggggtgtttggttgattttgtaacatccatttgtctatgtctatcaatgatcggcagatacctgcagtaaacgcgcttagggacatgcgttcattt |
6213787 |
T |
|
| Q |
216 |
ctggacgcaaatccatctgaaataatcaccatctttattgaggattatgttagagctcctgcagccctaactaaggtcatccaagcttcagggattaaca |
315 |
Q |
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| T |
6213786 |
ctggacgcaaatccatctgaaataatcaccatctttattgaggattatgttagagctcctgcagccctaactaaggtcatccaagcttcagggattaaca |
6213687 |
T |
|
| Q |
316 |
agtacatgttcccggttggtcggttgcccaagaacggtagcgattggcctactgttgatgacatgatcctgaacaatcaacgatttatcgcattctcctc |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6213686 |
agtacatgttcccggttggtcggttgcccaagaacggtagcgattggcctactgttgatgacatgatcctgaacaatcaacgatttatcgcattctcctc |
6213587 |
T |
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| Q |
416 |
gagatcttccaaggaagcagctgaaggcattcctttcacgtggaaatacgtcgtagaaaaccaatgtgagtaat |
489 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6213586 |
gagatcttccaaggaagcagctgaaggcattcctttcacgtggaaatacgtcgtagaaaaccaatgtgagtaat |
6213513 |
T |
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