View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_high_24 (Length: 473)
Name: NF19358_high_24
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 13 - 455
Target Start/End: Complemental strand, 2008894 - 2008441
Alignment:
| Q |
13 |
aatatgttgttagagataaacaattgtatcaggaaaattgttgattaaggagaatgaggaaggaaaaattgcaaacaatgttgtacgatggagtacttgc |
112 |
Q |
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| T |
2008894 |
aatatgttgttagagataaacaattgtatcaggaaaattgttgattaaggagaatgaggaaggaaaaattgcaaacaatgttgtacgatggagtacttgc |
2008795 |
T |
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| Q |
113 |
agttgcaatttcaatcttaatagctgctttgtagcaccgaaaaatttaggttgtaagtgtatcaagtgtctggcattgacacgacactgacacatgttta |
212 |
Q |
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| T |
2008794 |
agttgtaatttcaatcttaatagctgctttgtagcaccgaaaaatttaggttgtaagtgtatcaagtgtctggcattgacacgacactgacacatgttta |
2008695 |
T |
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| Q |
213 |
aatccaataattccatttttgaaattatcactagtgtcagcg-----------tgtccggcgaatgtgtcagtgtttcatagatacttgcctatataaat |
301 |
Q |
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| T |
2008694 |
aatccaataattccatttttcaaattatcactagtgtcagcgtgtcggtgtcgtgtccggtgaatgtgtcagtgtttcatagatacttgcctatataaat |
2008595 |
T |
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| Q |
302 |
ttgatagttacaatcttatgttaaagttttcattgctagcagctatattgagatggatgattacaaaatgctgagctcagagaaactgcaaagtttgggt |
401 |
Q |
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| T |
2008594 |
ttgatagttacaatcttatgttaaagttttcattgctagcagctatattgagatggatgattacaaaatgctgagctcagagaaactgcaaagtttgggt |
2008495 |
T |
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| Q |
402 |
tggaaattcaggccattggaggaaacactcattgactctgttgagagctataag |
455 |
Q |
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| T |
2008494 |
tggaaactcaggccattggaggaaacactcattgactctgttgagagctataag |
2008441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 300 - 455
Target Start/End: Original strand, 1741746 - 1741901
Alignment:
| Q |
300 |
atttgatagttacaatcttatgttaaagttttcattgctagcagctatattgagatggatgattacaaaatgctgagctcagagaaactgcaaagtttgg |
399 |
Q |
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||||||| ||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1741746 |
atttgatggttacaaacttatgttaaagttttcatttgtggcagctatattgagatggatgattacaaaatgctgagctcagagaaactgcaaagtttgg |
1741845 |
T |
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| Q |
400 |
gttggaaattcaggccattggaggaaacactcattgactctgttgagagctataag |
455 |
Q |
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| T |
1741846 |
gttggaaattcaggccattggaggaaacactcattgactctgttgagagctataag |
1741901 |
T |
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