View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19358_high_25 (Length: 462)

Name: NF19358_high_25
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19358_high_25
NF19358_high_25
[»] chr7 (3 HSPs)
chr7 (171-308)||(44646690-44646828)
chr7 (16-67)||(44646921-44646973)
chr7 (143-179)||(44646830-44646866)


Alignment Details
Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 171 - 308
Target Start/End: Complemental strand, 44646828 - 44646690
Alignment:
Q  171 tatcaaatttttgttcacctcaaaaaagttgttttgatccctctaaaaaa-tttgnnnnnnnngccaatattctgattttactcaannnnnnnaatcact 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||        |||||||||||||||||||||||       |||||||    
T  44646828 tatcaaatttttgttcacctcaaaaaagttgttttgatccctctaaaaaaatttgttttttttgccaatattctgattttactcaatttttttaatcact 44646729  T
Q  270 gttatttataaaagtttatgtttcttgtttcaaacgata 308  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  44646728 gttatttataaaagttcatgtttcttgtttcaaacgata 44646690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 44646973 - 44646921
Alignment:
Q  16 ataatacagaatta-agcaatacagataccgtccaacacttaaatacaactgg 67  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  44646973 ataatacagaattacagcaatacagataccgtccaacacttaaatacaactgg 44646921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 44646866 - 44646830
Alignment:
Q  143 ggtacaagggtcaaatatgattttagtctatcaaatt 179  Q
    |||||||||||||||||||||||| ||||||||||||    
T  44646866 ggtacaagggtcaaatatgattttggtctatcaaatt 44646830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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