View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_high_29 (Length: 441)
Name: NF19358_high_29
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_high_29 |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 34 - 396
Target Start/End: Complemental strand, 2434702 - 2434339
Alignment:
| Q |
34 |
tctcaatacttcagattccttgatcaattgcaactgtgttatcttatactgatatctaataataattgatgaaag-agagagcatgacatacagaaccag |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2434702 |
tctcaatacttcagattccttgatcaattgcaactgtgttagcttatactgatatctaataataattgatgaaaggagagagcatgacatacagaaccag |
2434603 |
T |
|
| Q |
133 |
gggtgagagcaccaagtcctgcagtagtgtccttggtcatcaggagtctcatgtaaggatcacaagacaagtacagatttttgagcaaaacaacatcatt |
232 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2434602 |
gggtgagagcaccaagtcctgcagtagtgtccttggtcatcaggagtctcatgtaaggatcacaagacaagtacagatttttgagcaaaaccacatcatt |
2434503 |
T |
|
| Q |
233 |
ggaaccttgtggaagcttgagtgttatggtactgtcaacaatgttgaggtctgattctttaggaaaaccagacacatagtccttcagaatcacttgcttg |
332 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2434502 |
ggaaccttgtggaagcttgagtgttatggtactgtcaacaatgttgaggtctgattctttaggaaaaccagacacatagtccttcagaatcacttgcttg |
2434403 |
T |
|
| Q |
333 |
ttcctcacttccgccatctcacgaattgtgtcacaaaaatctttgtggtgtttgtgttgtacat |
396 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
2434402 |
ttcctcacttccgccatctcaggaattgtgtcactaaaatctttgtggtgtttgtgttgtacat |
2434339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 91 - 420
Target Start/End: Complemental strand, 2431064 - 2430733
Alignment:
| Q |
91 |
aataataattgatgaaagagagagcatgacatacagaaccaggggtgagagcaccaagtcctgcagtagtgtccttggtcatcaggagtctcatgtaagg |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||| ||| |||||||||||| |
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| T |
2431064 |
aataataattgatgaaagagagagcatgacatacaaaaccaggggtgagagcaccaagttctgcagtagtgtctttggtcatgcggattctcatgtaagg |
2430965 |
T |
|
| Q |
191 |
atcacaagacaagtacagatttttgagcaaaacaacatcattggaaccttgtggaagcttgagtgttatggtactgtcaacaatgttgaggtctgattct |
290 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||| ||||| |||||||| ||||| || | |||||||||| |
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|
| T |
2430964 |
atcacaagacaagtacagattttttagcagaacaacatcatttgaaccttgtggaagcttgagagttatagtactgtctacaatattcatgtctgattct |
2430865 |
T |
|
| Q |
291 |
ttaggaaaaccagacacatagtccttcagaatcacttgcttgttcctcacttccgccatctcacgaattgtgtcacaaaaatctttgtggtgtttgtgtt |
390 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||| |
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|
| T |
2430864 |
ttaggaaaaccagacacatagtccttcagaatcacttgcttgttcctcatttccgccatctcaggaattgtgttgcaaaaatctttgtggtgtttgtgtt |
2430765 |
T |
|
| Q |
391 |
gtacatgt--acgtctaatacaactggccaca |
420 |
Q |
| |
|
|||||||| || ||||||||||||||||||| |
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|
| T |
2430764 |
gtacatgtacacatctaatacaactggccaca |
2430733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 102 - 349
Target Start/End: Complemental strand, 2427799 - 2427552
Alignment:
| Q |
102 |
atgaaagagagagcatgacatacagaaccaggggtgagagcaccaagtcctgcagtagtgtccttggtcatcaggagtctcatgtaaggatcacaagaca |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||| | | ||||| |||||||||||| || | |
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|
| T |
2427799 |
atgaaagagagagcatgacatacagaaccaggggtgagaccaccaagtcctgcaatagtgtccttggccatgaaaattctcaggtaaggatcacaggata |
2427700 |
T |
|
| Q |
202 |
agtacagatttttgagcaaaacaacatcattggaaccttgtggaagcttgagtgttatggtactgtcaacaatgttgaggtctgattctttaggaaaacc |
301 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||| ||||| | || ||||| ||||||| || | ||||||||| ||||||||||| |
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|
| T |
2427699 |
agtagagatttttgagcagaacaacatcattggaaccttgtggaaggttgagaataattgtactatcaacaacattcatgtctgattccttaggaaaacc |
2427600 |
T |
|
| Q |
302 |
agacacatagtccttcagaatcacttgcttgttcctcacttccgccat |
349 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||| ||||||| |||||| |
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|
| T |
2427599 |
agacacatagtctctcaaaatcacttgcttgtttctcacttgcgccat |
2427552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 102 - 349
Target Start/End: Complemental strand, 1458092 - 1457845
Alignment:
| Q |
102 |
atgaaagagagagcatgacatacagaaccaggggtgagagcaccaagtcctgcagtagtgtccttggtcatcaggagtctcatgtaaggatcacaagaca |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||| | | ||||| |||||||||||| || | |
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|
| T |
1458092 |
atgaaagagagagcatgacatacagaaccaggggtgagaccaccaagtcctgcaatagtgtccttggccatgaaaattctcaggtaaggatcacaggata |
1457993 |
T |
|
| Q |
202 |
agtacagatttttgagcaaaacaacatcattggaaccttgtggaagcttgagtgttatggtactgtcaacaatgttgaggtctgattctttaggaaaacc |
301 |
Q |
| |
|
|||| |||||||| |||| ||||||||||||||||||||||||||| ||||| | || ||||| ||||||| || | ||||||||| ||||||||||| |
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|
| T |
1457992 |
agtagagattttttagcagaacaacatcattggaaccttgtggaaggttgagaataattgtactatcaacaacattcatgtctgattccttaggaaaacc |
1457893 |
T |
|
| Q |
302 |
agacacatagtccttcagaatcacttgcttgttcctcacttccgccat |
349 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||| ||||||| |||||| |
|
|
| T |
1457892 |
agacacatagtctctcaaaatcacttgcttgtttctcacttgcgccat |
1457845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 180 - 335
Target Start/End: Original strand, 2519215 - 2519370
Alignment:
| Q |
180 |
ctcatgtaaggatcacaagacaagtacagatttttgagcaaaacaacatcattggaaccttgtggaagcttgagtgttatggtactgtcaacaatgttga |
279 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| || ||||||||||||| |||||||||||||||| |||||||||||||||| ||||| | |
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|
| T |
2519215 |
ctcatgtaaggatcacaagacaagtagagatttttgagcagaagaacatcattggaagcttgtggaagcttgagagttatggtactgtcaatgatgttca |
2519314 |
T |
|
| Q |
280 |
ggtctgattctttaggaaaaccagacacatagtccttcagaatcacttgcttgttc |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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|
| T |
2519315 |
tgtctgattctttaggaaaaccagacacatagtgtttcagaattacttgcttgttc |
2519370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 180 - 335
Target Start/End: Original strand, 2507413 - 2507568
Alignment:
| Q |
180 |
ctcatgtaaggatcacaagacaagtacagatttttgagcaaaacaacatcattggaaccttgtggaagcttgagtgttatggtactgtcaacaatgttga |
279 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| | ||| ||| |||||||||||||| ||||||||| || |||| ||||| ||||||||||||| |
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|
| T |
2507413 |
ctcatgtaaggatcacaagacaagtaaagatttttaaccaatacagtatcattggaaccttctggaagcttaagatttatagtactatcaacaatgttga |
2507512 |
T |
|
| Q |
280 |
ggtctgattctttaggaaaaccagacacatagtccttcagaatcacttgcttgttc |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
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|
| T |
2507513 |
ggtctgattctttaggaaaaccagacacatagtgtttcagaagcacttgcttgttc |
2507568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 180 - 342
Target Start/End: Original strand, 2498881 - 2499040
Alignment:
| Q |
180 |
ctcatgtaaggatcacaagacaagtacagatttttgagcaaaacaacatcattggaaccttgtggaagcttgagtgttatggtactgtcaacaatgttga |
279 |
Q |
| |
|
|||||| | ||||||||||||||||| | |||||| |||| |||| ||||||||||||||||||||||| || || || |||| |||| |||||| | |
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|
| T |
2498881 |
ctcatgaatggatcacaagacaagtataaattttttagcagaaca---tcattggaaccttgtggaagcttaagagtaattatactttcaataatgttca |
2498977 |
T |
|
| Q |
280 |
ggtctgattctttaggaaaaccagacacatagtccttcagaatcacttgcttgttcctcactt |
342 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2498978 |
tgtctgattctttaggaaaaccagatacatagtccttcagaatcacttgcttgttcctcactt |
2499040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 180 - 335
Target Start/End: Original strand, 2514503 - 2514658
Alignment:
| Q |
180 |
ctcatgtaaggatcacaagacaagtacagatttttgagcaaaacaacatcattggaaccttgtggaagcttgagtgttatggtactgtcaacaatgttga |
279 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||| | ||| ||| |||||||||||||| ||||||||| || |||| ||||| ||||||||||||| |
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|
| T |
2514503 |
ctcatttaaggatcacaagacaagtaaagatttttaaccaatacagtatcattggaaccttctggaagcttaagatttatagtactatcaacaatgttga |
2514602 |
T |
|
| Q |
280 |
ggtctgattctttaggaaaaccagacacatagtccttcagaatcacttgcttgttc |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||| |||||||| |||| |
|
|
| T |
2514603 |
ggtctgattctttaggaaaaccagacacataatgtttcagaagcacttgctggttc |
2514658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 2431350 - 2431273
Alignment:
| Q |
11 |
ttattctatgataaaaaataaattctcaatacttcagattccttgatcaattgcaactgtgttatcttatactgatatctaat |
93 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| |||||||||||||||||| |
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|
| T |
2431350 |
ttattctatgataaaaaataaattctcaatac-----attcctttatcaaaatcaactgtgttagcttatactgatatctaat |
2431273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 231 - 289
Target Start/End: Complemental strand, 11845990 - 11845932
Alignment:
| Q |
231 |
ttggaaccttgtggaagcttgagtgttatggtactgtcaacaatgttgaggtctgattc |
289 |
Q |
| |
|
||||| |||||||||| |||| |||||||||||||||||||||||| | ||||||||| |
|
|
| T |
11845990 |
ttggagccttgtggaattttgaatgttatggtactgtcaacaatgttcatgtctgattc |
11845932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 289
Target Start/End: Complemental strand, 23925020 - 23924962
Alignment:
| Q |
231 |
ttggaaccttgtggaagcttgagtgttatggtactgtcaacaatgttgaggtctgattc |
289 |
Q |
| |
|
||||| |||||||||| |||| |||||||||||| ||||||||||| | ||||||||| |
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|
| T |
23925020 |
ttggagccttgtggaattttgaatgttatggtactatcaacaatgttcatgtctgattc |
23924962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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