View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_high_36 (Length: 429)
Name: NF19358_high_36
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_high_36 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 16 - 429
Target Start/End: Original strand, 47693584 - 47694003
Alignment:
| Q |
16 |
tcaattctggtcagtggggaaagtggagctggtaaaacggaaactacgaaaatgcttatgcaataccttgcttacttaggtggtagggcagccactgaag |
115 |
Q |
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| T |
47693584 |
tcaattctggtcagtggggaaagtggagctggtaaaactgaaactacgaaaatgcttatgcaataccttgcttacttaggtggtagggcagccactgaag |
47693683 |
T |
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| Q |
116 |
gacgaaccgttgaacaacaagttcttgaagtatgatttcnnnnnnnatcttcccctacagcgcaaaattcaatttctctcttcttgaactgccactcatt |
215 |
Q |
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| T |
47693684 |
gacgaaccgttgaacaacaagttcttgaagtatgatttctttttttatcttcccctacagcgcaaaattcaatttttctcttcttgaactgccactcatt |
47693783 |
T |
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| Q |
216 |
tgaaacttttgtattaacttatttgagtacagtcaaatccagttttggaagcatttggtaatgctaaaactgtcaggaataacaattccaggcaagtctt |
315 |
Q |
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| T |
47693784 |
tgagacttttgtattaacttatttgagtgcagtcaaatccagttttggaagcatttggtaatgctaaaactgtcaggaataacaattccaggcaagtctt |
47693883 |
T |
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| Q |
316 |
ccttacatgtgagcagtaaatattcttgtgtttatttctctatgat------atatataaattaactttgttgcaagtctttgttaaatacgggaaaagt |
409 |
Q |
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| T |
47693884 |
ccttacatgtgagcagtaaatattcttgtgtttatttctctatgatatgctgatatataaattaactttgttgcaagtctttgttaaatacgggaaaagt |
47693983 |
T |
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| Q |
410 |
gattcattgtgtttcattct |
429 |
Q |
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| T |
47693984 |
gattcattgtgtttcattct |
47694003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 9e-43; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 16 - 152
Target Start/End: Complemental strand, 35832272 - 35832136
Alignment:
| Q |
16 |
tcaattctggtcagtggggaaagtggagctggtaaaacggaaactacgaaaatgcttatgcaataccttgcttacttaggtggtagggcagccactgaag |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||| ||| |||| |||||||||||| || | ||||||| |
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| T |
35832272 |
tcaattctggtcagtggggaaagtggagctggtaaaactgaaactacaaaaatgattatgcaattcctagctttcttaggtggtagagctgtgactgaag |
35832173 |
T |
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| Q |
116 |
gacgaaccgttgaacaacaagttcttgaagtatgatt |
152 |
Q |
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| T |
35832172 |
gaagaacagttgaacaacaagttcttgaagtatgatt |
35832136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 245 - 307
Target Start/End: Complemental strand, 35832030 - 35831968
Alignment:
| Q |
245 |
cagtcaaatccagttttggaagcatttggtaatgctaaaactgtcaggaataacaattccagg |
307 |
Q |
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| T |
35832030 |
cagtcaaatccagttctggaagcatttggcaatgccaaaactgtcaggaataacaattccagg |
35831968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 143
Target Start/End: Complemental strand, 13858780 - 13858660
Alignment:
| Q |
23 |
tggtcagtggggaaagtggagctggtaaaacggaaactacgaaaatgcttatgcaataccttgcttacttaggtggtagggcagccactgaaggacgaac |
122 |
Q |
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| T |
13858780 |
tggttagtggagaaagtggagccggtaaaacagaaagtacaaagatgcttatgcattaccttgcctatttgggaggaagagcagcaactgagggacggtc |
13858681 |
T |
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| Q |
123 |
cgttgaacaacaagttcttga |
143 |
Q |
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| T |
13858680 |
tgtggagcaacaagttcttga |
13858660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 303
Target Start/End: Complemental strand, 13858531 - 13858473
Alignment:
| Q |
245 |
cagtcaaatccagttttggaagcatttggtaatgctaaaactgtcaggaataacaattc |
303 |
Q |
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| T |
13858531 |
cagtccaatcctgttttagaagcatttggaaatgcaaaaactgttaggaataataattc |
13858473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 307
Target Start/End: Complemental strand, 31189811 - 31189749
Alignment:
| Q |
245 |
cagtcaaatccagttttggaagcatttggtaatgctaaaactgtcaggaataacaattccagg |
307 |
Q |
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| T |
31189811 |
cagtcaaacccagttcttgaagcatttggtaatgcaaaaacagttagaaatgacaattccagg |
31189749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 26465071 - 26465123
Alignment:
| Q |
23 |
tggtcagtggggaaagtggagctggtaaaacggaaactacgaaaatgcttatg |
75 |
Q |
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| T |
26465071 |
tggtaagtggagaaagtggagctggtaaaaccgagacgactaaaatgcttatg |
26465123 |
T |
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