View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_high_38 (Length: 422)
Name: NF19358_high_38
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_high_38 |
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Alignment Details
Target: chr7 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 11 - 405
Target Start/End: Original strand, 46557302 - 46557699
Alignment:
| Q |
11 |
cagagacgtatgttagaagtagtaaaagagagttattaaaaccgcatgcagaggaatgaatgaatgtttgatttaccttgcacatgagaggttgtaattg |
110 |
Q |
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| T |
46557302 |
cagagacgtatgttagaagtagtaaaagagagttattaaaaccgcatgcagaggaatgaatgaatgtttgatttaccttgcacatgagaggttgtaattg |
46557401 |
T |
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| Q |
111 |
ttgttcttctggtggtagaggtggtggtgcttcttgaacaactactagttcgggtcttgtttctgttgcttccattgggaagtgaaaagaaacaagagcg |
210 |
Q |
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| T |
46557402 |
ttgttcttctggtggtagaggtggtggtgcttcttgaacaactactagttcgggtcttgtttctgttgcttccattgggaagtgaaaagaaacaagagcg |
46557501 |
T |
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| Q |
211 |
atgtttagaaagagaaagagaggaggttactaattaagaaca---aggctttaaggttaattttggtatataaaaggtgatcacgaagaagaatgggagg |
307 |
Q |
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| T |
46557502 |
atgtttagaaagagaaagagaggaggttactaattaagaacaaggaggctttaaggttaattttggtatataaaaggtgatcacgaagaagaatgggagg |
46557601 |
T |
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| Q |
308 |
agaatatcgttagaaattcctagatctttccagaataatataaagttatcatcattatcaccttataatagaatttaaaaatatcatggcatacaaat |
405 |
Q |
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| T |
46557602 |
agaatatcgttagaaattcctagatctttccagaataatataaagttatcatcattatcaccttataatagaatttaaaaacatcatggcatacaaat |
46557699 |
T |
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