View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_high_41 (Length: 419)
Name: NF19358_high_41
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_high_41 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 19 - 419
Target Start/End: Original strand, 52876311 - 52876709
Alignment:
| Q |
19 |
agactgtgaatttacctatgtttggagagatttctattttctcactggtggtgttgctattctctgtggcatttgcgataatatgggctgctactcgacg |
118 |
Q |
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| T |
52876311 |
agactgtgaatttacctatgtttggagagatttctattttctcactggtggtgttgctattctctgtggcatttgcgataatatgggctgctactcgacg |
52876410 |
T |
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| Q |
119 |
agaatcattttcatggtttggccaagatgttcttgtaagtagaagtttctagtaccaacacaatttctattatcattgcaatttatgcactaaaacttta |
218 |
Q |
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| T |
52876411 |
agaatcattttcatggtttggccaagatgttcttgtaagtggaagtttctagtaccaatacaatttctattatcattgcaatttatgcactaaaacttta |
52876510 |
T |
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| Q |
219 |
agacaaagagacaaactttggaatatattactcatattgataattgtatgagatttaatttgttttctttaaacatgtcattaaccgactctaattgatg |
318 |
Q |
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| T |
52876511 |
agacaaagagacaaactttggaatatattactcatattgataattgtatgagatttaatttgttttctttaaacatgtcattaaccgactctaattgatg |
52876610 |
T |
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| Q |
319 |
aaacaagacaaatccatgannnnnnnnnncttttcaaaaacaaaggcaaaagttgcactgatttttagtcgtaggtttaactttgttgatgacttcatac |
418 |
Q |
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| T |
52876611 |
aaacaaaacaaatccatga--ttttttttcttttcaaaaacaaaggcaaaagttgcactgatttttagtcgtaggtttaactttgttgatgacttcatac |
52876708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 158
Target Start/End: Complemental strand, 256471 - 256332
Alignment:
| Q |
19 |
agactgtgaatttacctatgtttggagagatttctattttctcactggtggtgttgctattctctgtggcatttgcgataatatgggctgctactcgacg |
118 |
Q |
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|||| |||||| ||||| | ||||| ||||||||||||||||| |||| ||||| |||||| | |||||||||| | | |||||||||||||||| |
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| T |
256471 |
agaccgtgaatgtacctctatttggggagatttctattttctcgctggcagtgttcttattctgtctggcatttgctgttttctgggctgctactcgaca |
256372 |
T |
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| Q |
119 |
agaatcattttcatggtttggccaagatgttcttgtaagt |
158 |
Q |
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||||| | ||| ||| |||||||||| |||||||||| |
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| T |
256371 |
tgaatcttattcgtggattggccaagacactcttgtaagt |
256332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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