View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_high_43 (Length: 412)
Name: NF19358_high_43
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_high_43 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 16 - 412
Target Start/End: Complemental strand, 54952639 - 54952244
Alignment:
| Q |
16 |
atcactatttggtcaattccataattggaaattgtttagtgtgaatatatgtggaatttgaattaaattgttcacatttagaccgtcggattaagatcag |
115 |
Q |
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| T |
54952639 |
atcactctttggtcaataccataattggaaattgtttagtgtgaatatatgtggaatttgaattaaattgttcacatttagaccgtcggatcaagattag |
54952540 |
T |
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| Q |
116 |
acaattcatgctctaactttatattttagactcgagtcagaaagtgagtgagtcgtaatatgtagtattcatgaatttcggaatagcaatgtcccgtgag |
215 |
Q |
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| T |
54952539 |
acaattcatgctctaattttatattttagactcgagtcggaaagtgagtgagtcgtaatatatagtattcatgaatttcgggatagcaatatcccatgag |
54952440 |
T |
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| Q |
216 |
atatatgttggatttgaattatctatgatcgtacatattcggaaagataagacggatcatattccaactttgtattttggactcaatttagtaaagttgg |
315 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
54952439 |
atatatgttgaatttgaattatctatgatcgtacatattcggtaagataagacggttcatattccaactttatattttggactcaatttagtaaagttgg |
54952340 |
T |
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| Q |
316 |
aagtttaaattcaatttgactgtccaaattgtgtcacgttaaatgcatggttatgtggcgtagtagtatcaaaagaggtgcgagtaaaaacctgaag |
412 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
54952339 |
aagtttaaatttaatttgactgtccaaattgtgtcacgttaaatgcatgattatgtggcgaagtagtatcaaaa-aggtgcgagtaaaaacctgaag |
54952244 |
T |
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