View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_high_45 (Length: 409)
Name: NF19358_high_45
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_high_45 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 8789130 - 8789526
Alignment:
| Q |
1 |
ttgtgaccaaaaccccttaggctaaaatggtcatcacagnnnnnnnnnnn---aagaatcatacatatagatagacttatcctcacataatatcgaccac |
97 |
Q |
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| T |
8789130 |
ttgtgaccaaaaccccttaggctaaaatggtcatcacagtattttttttttttaagaatcatacatatagatagacttatcctcacataatatcgaccac |
8789229 |
T |
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| Q |
98 |
ttctctggctcacaaatttcatccactcaatcataatatctttgatccaaccagaaaagnnnnnnnnnnccatactaccctatagttcactcaaaatctg |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
8789230 |
ttctctggctcacaaatttcatccactcaatcataatatctttgatccaaccagaaaagaaaaaaaaaaccatactaccctatagttcactcaaaatctg |
8789329 |
T |
|
| Q |
198 |
catatacatatcatcactttattaaataacattannnnnnnnnnnnnnnnnnacattttcttgattcttccaataacaacatggctgctgcagtaacagc |
297 |
Q |
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||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8789330 |
catatacatatcatcacttaattaaataacattactctctctctctctctctacattttcttgattcttccaataacaacatggctgctgcagtaacagc |
8789429 |
T |
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| Q |
298 |
cgccgtctcttttccatactccaactccacttctcttccgatcaggacatctgttatttccccagatagacttgtcttcaaaaaggtacgtttcatt |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8789430 |
cgccgtctcttttccatactccaactccacttctcttccgatcaggacatctgttatttccccagatagacttgtcttcaaaaaggtacgtttcatt |
8789526 |
T |
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