View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_high_55 (Length: 376)
Name: NF19358_high_55
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_high_55 |
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Alignment Details
Target: chr6 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 354
Target Start/End: Complemental strand, 26454379 - 26454036
Alignment:
| Q |
18 |
tgaacttgaaactgagctttatgtaacgatggccaataatcagtaagtttggtatgtattccattgagctggtaaaataaataaa-taaaa------tgt |
110 |
Q |
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| T |
26454379 |
tgaacttgaaactgagctttatgtaacgatggccaataatcagtaagtttggtatgtattccattgagctggtaaaataaataaaataaaaaaagaatgt |
26454280 |
T |
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| Q |
111 |
taagttatttcattgatgcttacttacatgtcataaaattaaatatagcttacatgttcagtagatggcgcgtgataatgcttgtcgcaatcttttaatt |
210 |
Q |
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| T |
26454279 |
taagttattccattgatgcttacttacatgtcataaaattaaatatagcttacatgttcagtagatggcgcgtgataatgcttgtcgcaatcttttaatt |
26454180 |
T |
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| Q |
211 |
catcgctacccttcttcgcaggccataacccgtgaattataaacctgttaatggttggccagtcatgaaaacaattattcgcaggatctttacagaacgt |
310 |
Q |
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| T |
26454179 |
catcgctacccttcttcgcaggccataacccgtgaattataaacctgttaatggttggccagtcatgaaaacaattattcgcaggatctttacagaacgt |
26454080 |
T |
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| Q |
311 |
gggtggccaagtttccaccagcttgaaatggtcgaaggttagat |
354 |
Q |
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| T |
26454079 |
gggtggccaagtttccgccagcttgaaatggtcgaaggtgagat |
26454036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 264 - 345
Target Start/End: Original strand, 26539615 - 26539696
Alignment:
| Q |
264 |
gttggccagtcatgaaaacaattattcgcaggatctttacagaacgtgggtggccaagtttccaccagcttgaaatggtcga |
345 |
Q |
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| T |
26539615 |
gttggccaatgatcaacacaattattctcaggatctttacaaaatgtgggtggccaagtttcatccagcttgaaatggtcga |
26539696 |
T |
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