View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19358_high_67 (Length: 339)
Name: NF19358_high_67
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_high_67 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 9166835 - 9167169
Alignment:
| Q |
1 |
taatgcaacaacaaatcacacatgaacaaaaaagaaaagaatcgacctattacaacccacatgcaaatattcactttgttcatgacaaatgttatcatct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
9166835 |
taatgcaacaacaaatcacacatgaacaaaaaagaaaagaatcgacctattacaacccacatgcaaatattcactttgttcatgacaaatattatcatct |
9166934 |
T |
|
| Q |
101 |
tttcatgtccacagcaatcatcaactaaacaactcagtattttgacctaaccttaccaagacacggtgtattcagtatcgcactatgaataaaatacaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
9166935 |
tttcatgtccacagcaatcatcaactaaacaactcagtattttgacctaaccttaccaagacacggtgtattcagtatcgtactatgaataaaatacaat |
9167034 |
T |
|
| Q |
201 |
ccgcttatccac--gg------tgt-attcatcttttatttatacatatgaacatacgaaataagaaagtattaaaggttcacaacttcaatgagagcan |
291 |
Q |
| |
|
| ||||||||| || ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9167035 |
gcacttatccacatggcaccattgtcatatatcttttatttatacatatgaacatacgaaataagaaagtattaaaggttcacaacttcaatgagagcat |
9167134 |
T |
|
| Q |
292 |
nnnnnnaattaaaatgttgtgttttcaagcagttc |
326 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
9167135 |
atttttaattaaaatgttgtgttttcaagcagttc |
9167169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 2 - 163
Target Start/End: Original strand, 9155416 - 9155582
Alignment:
| Q |
2 |
aatgcaacaacaaatcacacatgaacaaaaaagaaa---agaatcgacctattacaacccacatgcaaatattcactttgttcatgacaa--atgttatc |
96 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| | ||| |||||||||||||||| | |||| ||||||||| |||||||||| | | ||| |
|
|
| T |
9155416 |
aatgcaacaccaaatcacacatgaacaaaaaagaaaaacaaaattgacctattacaacccagaggcaataattcactttcttcatgacaaacacataatc |
9155515 |
T |
|
| Q |
97 |
atcttttcatgtccacagcaatcatcaactaaacaactcagtattttgacctaaccttaccaagaca |
163 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||| |||||||||| ||| |||||| |||| |
|
|
| T |
9155516 |
ctcttttcatgtccacaacaatcatcaattaaacaactcaatattttgacccaacattaccatgaca |
9155582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University