View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_high_75 (Length: 327)
Name: NF19358_high_75
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_high_75 |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 320
Target Start/End: Complemental strand, 25514262 - 25513961
Alignment:
| Q |
19 |
ttaacctctttatttctctctagaatggttatatatatggtctatggatacattttttcattgatgtgatgcagtttttgttaattaatttgatgtgtag |
118 |
Q |
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| T |
25514262 |
ttaacctctttatttctctctagaatggttatatatatggtctatggatacattttttcattgatgtgatgcagtttttgttaattaatttgatgtgtag |
25514163 |
T |
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| Q |
119 |
gactaggaaggagccatggagggcagacaaggaagcatcagttaggatcagaagggtatcaagaaatgccctcaaacattgatgaatccatgtttgggaa |
218 |
Q |
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| T |
25514162 |
gactaggaaggagccatggagggcagacaaggaagcatcagttaggatcagaagggtatcaagaaatgccctcaaacattgatgaatccatgtttgggaa |
25514063 |
T |
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| Q |
219 |
tggctgaaaaaacatacacgttcttagctcaagtcttttctcttttctattctacttgtttgttcagttgaagctgtagaagtactagtcttttgatgat |
318 |
Q |
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| T |
25514062 |
tggctgaaaaaacattcacgttcttagctcaagtcttttctcttttctattctacttgtttgttcagttgaagctgtagaagtactagtcttttgatgat |
25513963 |
T |
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| Q |
319 |
gt |
320 |
Q |
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|| |
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| T |
25513962 |
gt |
25513961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 182
Target Start/End: Complemental strand, 25523195 - 25523135
Alignment:
| Q |
122 |
taggaaggagccatggagggcagacaaggaagcatcagttaggatcagaagggtatcaaga |
182 |
Q |
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|||||||||| | ||||||||||||||||||||| |||||||| |||||||| |||||||| |
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| T |
25523195 |
taggaaggagtcgtggagggcagacaaggaagcagcagttagggtcagaaggatatcaaga |
25523135 |
T |
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