View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_high_79 (Length: 321)
Name: NF19358_high_79
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_high_79 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 10333281 - 10332970
Alignment:
| Q |
1 |
agaatctccattcgtaagaaatatgcaagatt-cctagaccagccatttcaaattctgacttcatgactgatttaaactcttcaatatcttgaactttgc |
99 |
Q |
| |
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|||||||| |||| ||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
10333281 |
agaatctctattcctaagaaatatgcaagctttcctagaccaatcatttcaaattctgacttcatgactgatttaaactcttcaatatcttgaatttatc |
10333182 |
T |
|
| Q |
100 |
ttccagtcaacataaaatcatccacatacaagcatacgataagtaaactagtctcttctcttccttttacatacactccatgctcaacaatgcatttctt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10333181 |
ttccagtcaacataaaatcatccacatacaagcatacgataagtaaactagtctcttctcttccttttacatacactccatgctcaacaatgcatttctt |
10333082 |
T |
|
| Q |
200 |
aaatccttctttcttaaagcatttgtcaannnnnnnattctaggccctaggttctcatttcaagctatatagagccttgtttagtttgaacactctatct |
299 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10333081 |
aaatccttctttcttaaagcatttgtcaatttttttattctaggccctaggttctcatttcaagctatatagagccttgtttagtttgaacactctatct |
10332982 |
T |
|
| Q |
300 |
tctttccctttg |
311 |
Q |
| |
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|||||||||||| |
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| T |
10332981 |
tctttccctttg |
10332970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 33685015 - 33684886
Alignment:
| Q |
1 |
agaatctccattcgtaagaaatatgcaagatt-cctagaccagccatttcaaattctgacttcatgactgatttaaactcttcaatatcttgaactttgc |
99 |
Q |
| |
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||||| ||||| | ||| ||||||||||| || |||| | ||| ||||||||| || ||||| ||||||||||| || |||| ||| |||| | |||| |
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| T |
33685015 |
agaatttccatgcctaataaatatgcaagcttacctaaatcagtcatttcaaactcagactttatgactgatttgaaatctttaatgtcttacatgttgc |
33684916 |
T |
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| Q |
100 |
ttccagtcaacataaaatcatccacataca |
129 |
Q |
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||||||| | ||||| |||||| ||||||| |
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| T |
33684915 |
ttccagttagcataagatcatctacataca |
33684886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 33702069 - 33701940
Alignment:
| Q |
1 |
agaatctccattcgtaagaaatatgcaagatt-cctagaccagccatttcaaattctgacttcatgactgatttaaactcttcaatatcttgaactttgc |
99 |
Q |
| |
|
||||| ||||| | ||| ||||||||||| || |||| | ||| ||||||||| || ||||| ||||||||||| || |||| ||| |||| | |||| |
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| T |
33702069 |
agaatttccatgcctaataaatatgcaagcttacctaaatcagtcatttcaaactcagactttatgactgatttgaaatctttaatgtcttacatgttgc |
33701970 |
T |
|
| Q |
100 |
ttccagtcaacataaaatcatccacataca |
129 |
Q |
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||||||| | ||||| |||||| ||||||| |
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|
| T |
33701969 |
ttccagttagcataagatcatctacataca |
33701940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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