View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19358_high_87 (Length: 307)

Name: NF19358_high_87
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19358_high_87
NF19358_high_87
[»] chr4 (3 HSPs)
chr4 (1-236)||(53328669-53328904)
chr4 (1-224)||(22898508-22898731)
chr4 (1-224)||(22950176-22950399)
[»] chr7 (2 HSPs)
chr7 (1-238)||(39954835-39955072)
chr7 (1-235)||(10575342-10575576)
[»] chr5 (1 HSPs)
chr5 (28-236)||(26358540-26358748)
[»] chr2 (2 HSPs)
chr2 (1-221)||(41027527-41027747)
chr2 (129-227)||(30012096-30012194)
[»] chr3 (7 HSPs)
chr3 (1-212)||(31825573-31825784)
chr3 (1-235)||(21584590-21584824)
chr3 (1-212)||(24919902-24920113)
chr3 (1-235)||(24982001-24982235)
chr3 (1-152)||(24497335-24497486)
chr3 (1-152)||(24923536-24923687)
chr3 (1-212)||(25084993-25085204)


Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 53328669 - 53328904
Alignment:
Q  1 aacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaagacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttc 100  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53328669 aacatccagggaatcacaaagcctgcgattcgtcgtctcgcaagacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttc 53328768  T
Q  101 tcaagatctttcttgagaatgtgattcgtgatgcagtcacctacacagagcatgctcgccgtaagactgttactgcaatggatgttgtttacgctctcaa 200  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53328769 tcaagatctttcttgagaatgtgattcgtgatgctgtcacatacacagagcatgctcgccgtaagactgttactgcaatggatgttgtttacgctctcaa 53328868  T
Q  201 gaggcagggaaggactctttacggtttcggcggtta 236  Q
    |||||||||||||||||||||||||||||| |||||    
T  53328869 gaggcagggaaggactctttacggtttcgggggtta 53328904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 22898508 - 22898731
Alignment:
Q  1 aacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaagacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttc 100  Q
    |||||||| ||||| |||||||| || ||||||||||| ||  |  | || || ||||||||||||||||| || || ||||| || || ||||||||      
T  22898508 aacatccagggaataacaaagccagcgattcgtcgtcttgctcgtagaggaggagtgaagcgtatcagtggtttgatttatgaggagacacgtggcgtgt 22898607  T
Q  101 tcaagatctttcttgagaatgtgattcgtgatgcagtcacctacacagagcatgctcgccgtaagactgttactgcaatggatgttgtttacgctctcaa 200  Q
    | ||||| ||| | |||||||||||| | ||||| || || ||||| ||||| ||| |  | ||||| |||||||| |||||||| ||||| || |||||    
T  22898608 tgaagatatttttggagaatgtgattagagatgctgtgacttacactgagcacgctagaaggaagacggttactgctatggatgtggtttatgccctcaa 22898707  T
Q  201 gaggcagggaaggactctttacgg 224  Q
    ||| |||||||| || ||||||||    
T  22898708 gagacagggaagaaccctttacgg 22898731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 22950176 - 22950399
Alignment:
Q  1 aacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaagacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttc 100  Q
    |||||||| ||||| |||||||| || ||||||||||| ||  |  | || || ||||||||||||||||| || || ||||| || || ||||||||      
T  22950176 aacatccagggaataacaaagccagcgattcgtcgtcttgctcgtagaggaggagtgaagcgtatcagtggtttgatttatgaggagacacgtggcgtgt 22950275  T
Q  101 tcaagatctttcttgagaatgtgattcgtgatgcagtcacctacacagagcatgctcgccgtaagactgttactgcaatggatgttgtttacgctctcaa 200  Q
    | ||||| ||| | |||||||||||| | ||||| || || ||||| ||||| ||| |  | ||||| |||||||| |||||||| ||||| || |||||    
T  22950276 tgaagatatttttggagaatgtgattagagatgctgtgacttacactgagcacgctagaaggaagacggttactgctatggatgtggtttatgccctcaa 22950375  T
Q  201 gaggcagggaaggactctttacgg 224  Q
    ||| |||||||| || ||||||||    
T  22950376 gagacagggaagaaccctttacgg 22950399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 8e-58; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 39955072 - 39954835
Alignment:
Q  1 aacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaagacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttc 100  Q
    ||||||||||| || || |||||||| ||||||||||| ||||| ||||||||||||||| | ||||| ||  | ||||| ||||| ||||| || ||||    
T  39955072 aacatccaaggcataaccaagcctgcgattcgtcgtcttgcaaggcgtggtggtgtgaagagaatcagcggtctcatctacgaagagactcgcggtgttc 39954973  T
Q  101 tcaagatctttcttgagaatgtgattcgtgatgcagtcacctacacagagcatgctcgccgtaagactgttactgcaatggatgttgtttacgctctcaa 200  Q
    |||||||||||||||||||||||||||||||||| || || ||||| ||||||||| |  | || |||||||| || ||||||||||| || ||||||||    
T  39954972 tcaagatctttcttgagaatgtgattcgtgatgctgttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaa 39954873  T
Q  201 gaggcagggaaggactctttacggtttcggcggttaaa 238  Q
    |||||||||||||||||| ||||||||||| |||||||    
T  39954872 gaggcagggaaggactctctacggtttcggtggttaaa 39954835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 10575342 - 10575576
Alignment:
Q  1 aacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaagacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttc 100  Q
    ||||||||||||||||||||||| || ||||||||  | || ||| | || ||||||||  | |||||||| || |||||||| |||||  | || ||      
T  10575342 aacatccaaggaatcacaaagccagcgattcgtcgattggcgagaagaggaggtgtgaaaagaatcagtggattgatctatgaggaaacaagaggtgtgt 10575441  T
Q  101 tcaagatctttcttgagaatgtgattcgtgatgcagtcacctacacagagcatgctcgccgtaagactgttactgcaatggatgttgtttacgctctcaa 200  Q
    | ||||||||  | |||||||| ||  | ||||| || || ||||| ||||||||  |  | || ||||| ||||| ||||||||||||||||| || ||    
T  10575442 tgaagatcttcttggagaatgttataagagatgctgttacttacactgagcatgcgaggaggaaaactgtgactgctatggatgttgtttacgcgcttaa 10575541  T
Q  201 gaggcagggaaggactctttacggtttcggcggtt 235  Q
    ||| || ||||| || || || |||||||| ||||    
T  10575542 gagacaaggaagaaccctctatggtttcggtggtt 10575576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 28 - 236
Target Start/End: Complemental strand, 26358748 - 26358540
Alignment:
Q  28 attcgtcgtctcgcaagacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgtgattc 127  Q
    ||||||||||| ||||| ||||||||||| || |||||||||||  | |||||||||||||||||||| ||||||||||| |||||||||||||| ||||    
T  26358748 attcgtcgtcttgcaaggcgtggtggtgtaaaacgtatcagtggtctgatctatgaagaaactcgtggtgttctcaagatatttcttgagaatgttattc 26358649  T
Q  128 gtgatgcagtcacctacacagagcatgctcgccgtaagactgttactgcaatggatgttgtttacgctctcaagaggcagggaaggactctttacggttt 227  Q
    ||||||| ||||| ||||| || |||||||| || || || |||||||| |||||||||||||| || ||||||||||| |||||||| ||||| |||||    
T  26358648 gtgatgctgtcacttacactgaacatgctcgtcgcaaaacagttactgctatggatgttgtttatgcgctcaagaggcaaggaaggaccctttatggttt 26358549  T
Q  228 cggcggtta 236  Q
     || |||||    
T  26358548 tgggggtta 26358540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 41027527 - 41027747
Alignment:
Q  1 aacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaagacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttc 100  Q
    ||||| |||||||| || |||||||| ||||||||| | ||| |  | || || ||||||||||| || || || ||||| ||||| || ||||||||      
T  41027527 aacattcaaggaattacgaagcctgcgattcgtcgtttggcacgtagaggaggagtgaagcgtataagcggtttgatctacgaagagacacgtggcgtgt 41027626  T
Q  101 tcaagatctttcttgagaatgtgattcgtgatgcagtcacctacacagagcatgctcgccgtaagactgttactgcaatggatgttgtttacgctctcaa 200  Q
    | ||||||||| | |||||||| ||||||||||| || || ||||||||||| ||| |  | |||||||||||||| |||||||||||||| ||  | ||    
T  41027627 tgaagatctttttggagaatgttattcgtgatgctgttacttacacagagcacgctaggagaaagactgttactgctatggatgttgtttatgcattgaa 41027726  T
Q  201 gaggcagggaaggactcttta 221  Q
    ||| || ||||||||||||||    
T  41027727 gagacaaggaaggactcttta 41027747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 227
Target Start/End: Original strand, 30012096 - 30012194
Alignment:
Q  129 tgatgcagtcacctacacagagcatgctcgccgtaagactgttactgcaatggatgttgtttacgctctcaagaggcagggaaggactctttacggttt 227  Q
    |||||| || || ||||| || || ||||| || ||||| || ||||| |||||||| ||||| || ||||||||||| |||||||| ||||| |||||    
T  30012096 tgatgctgttacttacactgaacacgctcgtcgcaagacagtgactgctatggatgtggtttatgcgctcaagaggcaaggaaggaccctttatggttt 30012194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 31825784 - 31825573
Alignment:
Q  1 aacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaagacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttc 100  Q
    |||||||| || ||||| |||||||| ||||||||  | || ||| | |||||||||||| | |||||||| || ||||||||||||||| | || ||      
T  31825784 aacatccagggtatcactaagcctgccattcgtcgattggcgagaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaactagaggtgtct 31825685  T
Q  101 tcaagatctttcttgagaatgtgattcgtgatgcagtcacctacacagagcatgctcgccgtaagactgttactgcaatggatgttgtttacgctctcaa 200  Q
    | ||||||||  | |||||||| || |||||||| ||||| ||||| ||||| ||| |  | ||||| ||||| || ||||||||||| || ||| | ||    
T  31825684 tgaagatcttcttggagaatgtcatccgtgatgcggtcacatacactgagcacgctaggaggaagacagttaccgcgatggatgttgtctatgctttgaa 31825585  T
Q  201 gaggcagggaag 212  Q
    ||||||||||||    
T  31825584 gaggcagggaag 31825573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 21584824 - 21584590
Alignment:
Q  1 aacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaagacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttc 100  Q
    ||||| || |||||||| ||||| || ||||||||  | || ||| | |||||||| ||| | |||||||| || || ||||| |||||  | || ||||    
T  21584824 aacattcagggaatcaccaagccagcgattcgtcgattggcgagaagaggtggtgttaagagaatcagtggtttgatttatgaggaaacaagaggagttc 21584725  T
Q  101 tcaagatctttcttg-agaatgtgattcgtgatgcagtcacctacacagagcatgctcgccgtaagactgttactgcaatggatgttgtttacgctctca 199  Q
    | ||||| ||||||| ||||||||||||||||||| || || ||||| ||||||||  |  | |||||||| ||||| |||||||||||||| ||| | |    
T  21584724 ttaagat-tttcttggagaatgtgattcgtgatgcggttacgtacactgagcatgcaaggaggaagactgtgactgctatggatgttgtttatgctttga 21584626  T
Q  200 agaggcagggaaggactctttacggtttcggcggtt 235  Q
    ||||||| ||||| || ||||| || ||||| ||||    
T  21584625 agaggcaaggaagaacgctttatggattcggaggtt 21584590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 24920113 - 24919902
Alignment:
Q  1 aacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaagacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttc 100  Q
    |||||||| || ||||| |||||||||||||||||  | |||||| | |||||||||||| | ||||| || || ||||||||||||||  | || ||      
T  24920113 aacatccagggtatcaccaagcctgcaattcgtcgattggcaagaagaggtggtgtgaagagaatcagcggtttgatctatgaagaaaccagaggtgtct 24920014  T
Q  101 tcaagatctttcttgagaatgtgattcgtgatgcagtcacctacacagagcatgctcgccgtaagactgttactgcaatggatgttgtttacgctctcaa 200  Q
    | ||||||||  | |||||||| ||||||||||| || || ||||| ||||| ||| |  | ||||| || || || |||||||| || || ||| | ||    
T  24920013 tgaagatcttcttagagaatgtcattcgtgatgctgtgacatacactgagcacgctaggaggaagacagtgacagccatggatgtcgtctatgctttgaa 24919914  T
Q  201 gaggcagggaag 212  Q
    ||||||||||||    
T  24919913 gaggcagggaag 24919902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 24982001 - 24982235
Alignment:
Q  1 aacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaagacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttc 100  Q
    |||||||| || ||||| |||||||| ||||||||  | |||||| | |||||||| ||| | |||||||| || || |||||||||||  | || ||      
T  24982001 aacatccagggtatcaccaagcctgctattcgtcgattggcaagaagaggtggtgttaagagaatcagtggtttgatatatgaagaaaccagaggtgtct 24982100  T
Q  101 tcaagatctttcttgagaatgtgattcgtgatgcagtcacctacacagagcatgctcgccgtaagactgttactgcaatggatgttgtttacgctctcaa 200  Q
    | ||||||||  | |||||||| || ||||||||||| || ||||| ||||| ||| |  | ||||||||||| || ||||||||||| || ||| | ||    
T  24982101 tgaagatcttcttggagaatgtcatccgtgatgcagttacatacactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaa 24982200  T
Q  201 gaggcagggaaggactctttacggtttcggcggtt 235  Q
    ||| || ||||| || || || |||||||| ||||    
T  24982201 gagacaaggaagaaccctctatggtttcggtggtt 24982235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 24497486 - 24497335
Alignment:
Q  1 aacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaagacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttc 100  Q
    |||||||| || ||||| |||||||| ||||||||  | |||||| | |||||||| ||| | |||||||| || ||||||||||||||  | || ||      
T  24497486 aacatccagggtatcaccaagcctgctattcgtcgattggcaagaagaggtggtgttaagagaatcagtggattgatctatgaagaaaccagaggtgtct 24497387  T
Q  101 tcaagatctttcttgagaatgtgattcgtgatgcagtcacctacacagagca 152  Q
    | ||||||||  | || |||||||| ||||||||||| || ||||| |||||    
T  24497386 tgaagatcttcttggaaaatgtgatccgtgatgcagttacatacactgagca 24497335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 24923687 - 24923536
Alignment:
Q  1 aacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaagacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttc 100  Q
    |||||||| || ||||| |||||||| ||||||||  | |||||| | |||||||| ||| | |||||||| || ||||||||||||||  | || ||      
T  24923687 aacatccagggtatcaccaagcctgctattcgtcgattggcaagaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtct 24923588  T
Q  101 tcaagatctttcttgagaatgtgattcgtgatgcagtcacctacacagagca 152  Q
    | ||||||||  | |||||||| ||||||||||| || || ||||| |||||    
T  24923587 tgaagatcttcttggagaatgtcattcgtgatgctgtgacatacactgagca 24923536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 25084993 - 25085204
Alignment:
Q  1 aacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaagacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttc 100  Q
    |||||||| || ||||| |||||||| |||||| |  | || ||| | |||||||||||| | |||||||| || || |||||||||||  | || ||      
T  25084993 aacatccagggtatcaccaagcctgccattcgtagattggcgagaagaggtggtgtgaagagaatcagtggtttgatatatgaagaaaccagaggtgtct 25085092  T
Q  101 tcaagatctttcttgagaatgtgattcgtgatgcagtcacctacacagagcatgctcgccgtaagactgttactgcaatggatgttgtttacgctctcaa 200  Q
    | ||||||||  | ||||||||||| ||||||||||| || ||||| ||||| ||  |  | |||||||| || || ||||||||||| || ||| | ||    
T  25085093 tgaagatcttcttggagaatgtgatccgtgatgcagttacatacactgagcacgcaaggaggaagactgtgacagccatggatgttgtctatgctttgaa 25085192  T
Q  201 gaggcagggaag 212  Q
    ||| ||||||||    
T  25085193 gagacagggaag 25085204  T

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