View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19358_high_89 (Length: 302)

Name: NF19358_high_89
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19358_high_89
NF19358_high_89
[»] chr1 (1 HSPs)
chr1 (18-302)||(31153154-31153429)


Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 31153429 - 31153154
Alignment:
Q  18 tttatgattttcatagaacattatggacccaatttagtgttgttctttttgtagtatttgtgttcgtagattaatatcggtcttttaccgatgagattaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  31153429 tttatgattttcatagaacattatggacccaatttagtgttgttctttttgtagtatttgtgttcgtagattaatatcggtcttttaccgatgagatgaa 31153330  T
Q  118 caacaatattagtcctgttttgatgaaatgaacaatacttgattgaaatttctcgtaagtcacaagagtatagttcaagcgttgaaacaaaagtaaacgt 217  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||        ||||||||||||||||    
T  31153329 caacaatattagtcctgttttgattaaatgaacaatacttgattgaaatttctcgtaagccacaagagtatagttc--------aaacaaaagtaaacgt 31153238  T
Q  218 gtttacaatacaagggaggtaggtgtttctttcaaaccagatggggtaaacatgttatttaaggaaccctcagggaggaaagtgc 302  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||| ||||||    
T  31153237 gtttacaatacaagggaggtaggtgtttctttcaaactagatggggtaaacatgttatttaa-gaaacctcagggaggtaagtgc 31153154  T

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