View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_high_9 (Length: 582)
Name: NF19358_high_9
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 128 - 566
Target Start/End: Original strand, 40134742 - 40135178
Alignment:
| Q |
128 |
cgaggttgtcgtgtgatgcaatagaagtagagagaccaaagctgcgatggaagagaggcaagggaaaaattataaacaaatttgcttatctcatttgtgc |
227 |
Q |
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| T |
40134742 |
cgaggttgtcgtgtgatgcaattgaagtagagagaccaaagctgcgatggaagagaggcaagggaaaaatcataaacaaattttcttatctcattagtgc |
40134841 |
T |
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| Q |
228 |
atcaaatgcaagatttaggtaggatatgataaacttatcttatcttatcttcttatcctcgccatcaaatgaaccaaaatatcataaaactcaatnnnnn |
327 |
Q |
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| T |
40134842 |
atcaaatgcaagatttaggtaggatatgataaacttatcttatcttatcttcttatcctcgtcatcaaatgaaccataatatcatataactcaataaaaa |
40134941 |
T |
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| Q |
328 |
nnntacagttgggcacttgcctcccacacgcaaagtactcatgttcctccttgatcactttttatgatttcaagttaaaataaaatatattaataccagt |
427 |
Q |
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| T |
40134942 |
aaatacagttggacacttgccccccacacgcaaagtactcatgttcctccttgatcactttt-atgatttcaagttaaaataaaatatattaatatcagt |
40135040 |
T |
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| Q |
428 |
aaaaatcttgattggcacaaggatgtgcacaaatagattcaaggcctaacaggtgatagtacaaaaataaagagccaacaacgagaatgaaaacaattga |
527 |
Q |
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| T |
40135041 |
aaaaatcttgtttagcacaag-atgtgcacaaatagattcaaggcctaacatgtgatagtacaaaaataaagagccaacaacgagaatgaaaacaattga |
40135139 |
T |
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| Q |
528 |
aagttaagtaacaaaactcatgctatggagaggattttg |
566 |
Q |
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| T |
40135140 |
aagttaagtaacaaaactcatgctatggagagaattttg |
40135178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 40134623 - 40134677
Alignment:
| Q |
9 |
agcacagagagaagaggtgagtttgaatgtagagagaggggttgaagacgatgat |
63 |
Q |
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| T |
40134623 |
agcacagagagaagaggtgagtttgaatgtagagagaggggttgaagacgatgat |
40134677 |
T |
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