View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_high_91 (Length: 297)
Name: NF19358_high_91
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_high_91 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 17 - 286
Target Start/End: Original strand, 28565735 - 28566003
Alignment:
| Q |
17 |
gtaagatttcaactttttgtaaatattaacagagctagagaaacaaatatttctacatgcaattttcagaaatagatacttaatctaattttataagggg |
116 |
Q |
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| T |
28565735 |
gtaagatttcaactttttgtaaatattaacagagctagagaaacaaaaatttctacatgcaattttcagaactagatacttaatctaattttataagggg |
28565834 |
T |
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| Q |
117 |
attttttagattatgaagtttgacaatattctttgatttcaggactttgcttctggtgactcatcaaaactactcctctggtgctcatgttattccatat |
216 |
Q |
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| T |
28565835 |
attttttagattatgaagtttgacaatattctt-gatttcaggactttgcttctggtgactcatcaaaactactcctctggtgctcatgttattccatat |
28565933 |
T |
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| Q |
217 |
ttgaaatatactactatcttttagcattggtttccttcttctagatgaattcttattttcattgtttctt |
286 |
Q |
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| T |
28565934 |
ttgaaatatactactatcttttagcattggtttccttcttctagatgaattcttattttcattgtttctt |
28566003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 28583762 - 28583855
Alignment:
| Q |
17 |
gtaagatttcaactttttgtaaatattaacagagctagagaaacaaatatttctacatgcaattttcagaaatagatacttaatctaattttat |
110 |
Q |
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| T |
28583762 |
gtaagcttttaacttgttgaaaatattaacagagctagaggaacgaaaacttcagcatgcaattttcagaactagacacttaatgttattttat |
28583855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 272
Target Start/End: Original strand, 28572720 - 28572758
Alignment:
| Q |
234 |
cttttagcattggtttccttcttctagatgaattcttat |
272 |
Q |
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| T |
28572720 |
cttttagaattggtttccttcttctagatgaattcttat |
28572758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 259
Target Start/End: Original strand, 24069390 - 24069445
Alignment:
| Q |
204 |
tgttattccatatttgaaatatactactatcttttagcattggtttccttcttcta |
259 |
Q |
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| T |
24069390 |
tgttattccatatttgaataatactactaccttttataattggtttccttcttcta |
24069445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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