View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_102 (Length: 288)
Name: NF19358_low_102
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_102 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 27 - 272
Target Start/End: Complemental strand, 32602640 - 32602391
Alignment:
| Q |
27 |
taaatttaattagttcctaccatattacttgnnnnnnnnatttaattttagaaacacttgattattactcctttacatataaaaatgatactgtccatgc |
126 |
Q |
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||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32602640 |
taaatttaattagttcctaccatattacttgttttttttattttattttagaaacacttgattattactcctttacatataaaaatgatactgtccatgc |
32602541 |
T |
|
| Q |
127 |
ctatattttagtataatttggaaatatttgaagcatccaattgttttcttatcctccatataggttg----gatgtcatgctccagcaaaaataaattat |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
32602540 |
ctatattttagtataatttggaaatatttgaagcatccaattgttttcttatcctccatataggttggatggatgtcatgctccagcaaaaataaagtat |
32602441 |
T |
|
| Q |
223 |
catttcaagattgatataaattctgaaatccaatggttatagtatatttt |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32602440 |
catttcaagattgatataaattctgaaatccaatggttatagtatatttt |
32602391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 37
Target Start/End: Original strand, 17235301 - 17235329
Alignment:
| Q |
9 |
caaaagtgcaattaagcctaaatttaatt |
37 |
Q |
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| T |
17235301 |
caaaagtgcaattaagcctaaatttaatt |
17235329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 35
Target Start/End: Original strand, 33749277 - 33749305
Alignment:
| Q |
7 |
ttcaaaagtgcaattaagcctaaatttaa |
35 |
Q |
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| T |
33749277 |
ttcaaaagtgcaattaagcctaaatttaa |
33749305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 9714893 - 9714861
Alignment:
| Q |
1 |
taggagttcaaaagtgcaattaagcctaaattt |
33 |
Q |
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||||||||||||||||||||||||||| ||||| |
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| T |
9714893 |
taggagttcaaaagtgcaattaagccttaattt |
9714861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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