View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_104 (Length: 281)
Name: NF19358_low_104
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_104 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 281
Target Start/End: Original strand, 42352777 - 42353040
Alignment:
| Q |
19 |
ccatccccttctcttctaaatgattgatgtcttttctcagttatataaaa-tattatgtcttctgagtatgcataattaggtctcattcccttttccttc |
117 |
Q |
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||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42352777 |
ccatccccttctcttctaaataattaatgtcttttctcagttatataaaaatattatgtcttctgagtatgcataattaggtctcattcccttttccttc |
42352876 |
T |
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| Q |
118 |
aaatttaatctttgttcctttcttccatccaggttgtacatttattgttaatagttccttctcttgaactacactcctgcatgataaaacaaattaaaca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
42352877 |
aaatttaatctttgttcctttcttccatccaggttgtacatttattgttaatagttcctcctcttgaactacactcctgcatgataaaacaaattaaaca |
42352976 |
T |
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| Q |
218 |
tcaaaaacatattcttaaatcatgtgtttctctctccctttcgggttaaattacatatacgtcc |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42352977 |
tcaaaaacatattcttaaatcatgtgtttctctctccctttcgggttaaattacatatacgtcc |
42353040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 20 - 272
Target Start/End: Complemental strand, 39969073 - 39968819
Alignment:
| Q |
20 |
catccccttctcttctaaatgattgatgtcttttctcagttatataaaatattatgtcttctgagtatgcataattaggtctc--attcccttttccttc |
117 |
Q |
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|||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39969073 |
catccccttctcttttaaataattgatgtcttttctcagatatataaaatattatgtcttctgagtatgcataattaggtctctcattcccttttccttc |
39968974 |
T |
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| Q |
118 |
aaatttaatctttgttcctttcttccatccaggttgtacatttattgttaatagttccttctcttgaactacactcctgcatgataaaacaaattaaaca |
217 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
39968973 |
aaatttaatctttgttcctttcttccatcctggttgtacatttattgttaatagttcctcctcttgaactacacccctgcatgataaaacaaattaaaca |
39968874 |
T |
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| Q |
218 |
tcaaaaacatattcttaaatcatgtgtttctctctccctttcgggttaaattaca |
272 |
Q |
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|||||||||||||| ||||||||||||||||||| ||||||| |||||||||||| |
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| T |
39968873 |
tcaaaaacatattcataaatcatgtgtttctctccccctttcaggttaaattaca |
39968819 |
T |
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