View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19358_low_106 (Length: 279)

Name: NF19358_low_106
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19358_low_106
NF19358_low_106
[»] chr1 (4 HSPs)
chr1 (86-261)||(28599304-28599479)
chr1 (86-261)||(26404485-26404660)
chr1 (1-73)||(28599505-28599577)
chr1 (86-261)||(6831506-6831681)
[»] chr5 (1 HSPs)
chr5 (86-261)||(17796974-17797149)
[»] chr4 (3 HSPs)
chr4 (86-261)||(1544852-1545027)
chr4 (86-261)||(28394559-28394734)
chr4 (1-65)||(28391206-28391273)
[»] chr6 (1 HSPs)
chr6 (86-261)||(7037556-7037731)
[»] chr8 (3 HSPs)
chr8 (86-261)||(32528772-32528947)
chr8 (86-261)||(26344977-26345152)
chr8 (1-65)||(32526810-32526877)
[»] chr7 (1 HSPs)
chr7 (86-261)||(30506320-30506493)
[»] chr2 (1 HSPs)
chr2 (95-229)||(43373304-43373438)


Alignment Details
Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 86 - 261
Target Start/End: Complemental strand, 28599479 - 28599304
Alignment:
Q  86 caagaaatagtggctcaatctactgccaaagcagagttttttgctgcaaatgctgctgtaaatcaagctatgcggctgacgaagatattgagtgatcttc 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  28599479 caagaaatagtggctcaatctactgccaaagcagagttttttgctgcaaatgctgctgtaaatcaagctatgcggctgacaaagatattgcgtgatcttc 28599380  T
Q  186 atcttgagcagaaagaacacaataggatttttgttgataatcaagttgcaatagctatttcccacaatccagtttt 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  28599379 atcttgagcagaaagaacacaataggatttttgttgataatcaagttgcaatagctatttcccacaattcagtttt 28599304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 86 - 261
Target Start/End: Original strand, 26404485 - 26404660
Alignment:
Q  86 caagaaatagtggctcaatctactgccaaagcagagttttttgctgcaaatgctgctgtaaatcaagctatgcggctgacgaagatattgagtgatcttc 185  Q
    ||||||| |||||||||||| |||||  |||| || ||| ||||||| | ||||||||||||||||||| |  || ||| ||||||||||||||||||||    
T  26404485 caagaaacagtggctcaatcaactgctgaagcggaatttgttgctgctactgctgctgtaaatcaagctctatggttgaggaagatattgagtgatcttc 26404584  T
Q  186 atcttgagcagaaagaacacaataggatttttgttgataatcaagttgcaatagctatttcccacaatccagtttt 261  Q
    ||||||||||||||||| ||| || ||| |||||||||||||||| |||||||||||||||||| ||||| |||||    
T  26404585 atcttgagcagaaagaagacactaagatctttgttgataatcaagctgcaatagctatttcccataatccggtttt 26404660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 28599577 - 28599505
Alignment:
Q  1 attgttgattttactcgtatgtgttagatctttataaagctcaagtcagaggtagcacaagtattctggagtt 73  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  28599577 attgttgattttactcgtatgtgttagatctttataaagctcaagtcggaggaagcacaagtattctggagtt 28599505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 86 - 261
Target Start/End: Complemental strand, 6831681 - 6831506
Alignment:
Q  86 caagaaatagtggctcaatctactgccaaagcagagttttttgctgcaaatgctgctgtaaatcaagctatgcggctgacgaagatattgagtgatcttc 185  Q
    ||||||| |||||||||||| |||||  |||| |||||| ||| |||||   ||||||| |||||||||||| ||||||  |||||||||||| | ||||    
T  6831681 caagaaacagtggctcaatcaactgctgaagcggagtttattgttgcaacgtctgctgttaatcaagctatgtggctgagaaagatattgagttaccttc 6831582  T
Q  186 atcttgagcagaaagaacacaataggatttttgttgataatcaagttgcaatagctatttcccacaatccagtttt 261  Q
    ||||||| || ||||||  || || ||| |||||||||||||||| | ||||||||||||| || |||||| ||||    
T  6831581 atcttgaccacaaagaagccactaagatctttgttgataatcaagcttcaatagctatttctcataatccaatttt 6831506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 86 - 261
Target Start/End: Original strand, 17796974 - 17797149
Alignment:
Q  86 caagaaatagtggctcaatctactgccaaagcagagttttttgctgcaaatgctgctgtaaatcaagctatgcggctgacgaagatattgagtgatcttc 185  Q
    ||||||| |||||||||||| |||||  |||| || ||| ||||||| | ||||||||||||||||||| |  || ||| ||||||||||||||||||||    
T  17796974 caagaaacagtggctcaatcaactgctgaagcggaatttgttgctgctactgctgctgtaaatcaagctctatggttgaggaagatattgagtgatcttc 17797073  T
Q  186 atcttgagcagaaagaacacaataggatttttgttgataatcaagttgcaatagctatttcccacaatccagtttt 261  Q
    ||||||||||||||||| ||| || ||| |||||||||||||||| |||||||||||||||||| ||||| |||||    
T  17797074 atcttgagcagaaagaagacactaagatctttgttgataatcaagctgcaatagctatttcccataatccggtttt 17797149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 86 - 261
Target Start/End: Original strand, 1544852 - 1545027
Alignment:
Q  86 caagaaatagtggctcaatctactgccaaagcagagttttttgctgcaaatgctgctgtaaatcaagctatgcggctgacgaagatattgagtgatcttc 185  Q
    ||||||| |||||||||||| |||||  |||| || ||| ||||||| | ||||||||||||||||||| |  || ||| ||||||||||||||||||||    
T  1544852 caagaaacagtggctcaatcaactgctgaagcggaatttgttgctgctactgctgctgtaaatcaagctctatggttgaggaagatattgagtgatcttc 1544951  T
Q  186 atcttgagcagaaagaacacaataggatttttgttgataatcaagttgcaatagctatttcccacaatccagtttt 261  Q
    ||||||||||||||||| ||| || ||| |||||||||||||||| |||||||||||||||||| ||||| |||||    
T  1544952 atcttgagcagaaagaagacactaagatctttgttgataatcaagctgcaatagctatttcccataatccggtttt 1545027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 86 - 261
Target Start/End: Original strand, 28394559 - 28394734
Alignment:
Q  86 caagaaatagtggctcaatctactgccaaagcagagttttttgctgcaaatgctgctgtaaatcaagctatgcggctgacgaagatattgagtgatcttc 185  Q
    ||||||| |||||||||||| |||||| |||| |||||| |||||||||  |||||||| |||||||||| | ||||||  |||||||||||||| ||||    
T  28394559 caagaaacagtggctcaatcaactgccgaagcggagtttattgctgcaacggctgctgttaatcaagctacgtggctgagaaagatattgagtgaccttc 28394658  T
Q  186 atcttgagcagaaagaacacaataggatttttgttgataatcaagttgcaatagctatttcccacaatccagtttt 261  Q
    ||||||| || ||||||  || || ||| |||||||||||||||| ||||||||||||||| || |||||||||||    
T  28394659 atcttgaccacaaagaagccactaagatctttgttgataatcaagctgcaatagctatttctcataatccagtttt 28394734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 28391206 - 28391273
Alignment:
Q  1 attgttgattttactcgtatgtgttagat---ctttataaagctcaagtcagaggtagcacaagtatt 65  Q
    |||| ||||||||| |||||||||| |||   |||| | |||| ||||||||||||||||||||||||    
T  28391206 attgatgattttacccgtatgtgttggattttctttctgaagcacaagtcagaggtagcacaagtatt 28391273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 86 - 261
Target Start/End: Original strand, 7037556 - 7037731
Alignment:
Q  86 caagaaatagtggctcaatctactgccaaagcagagttttttgctgcaaatgctgctgtaaatcaagctatgcggctgacgaagatattgagtgatcttc 185  Q
    ||||||| |||||||||||| |||||  |||| || ||| ||||||| | ||||||||||||||||||| |  || ||| ||||||||||||||||||||    
T  7037556 caagaaacagtggctcaatcaactgctgaagcggaatttgttgctgctactgctgctgtaaatcaagctctatggttgaggaagatattgagtgatcttc 7037655  T
Q  186 atcttgagcagaaagaacacaataggatttttgttgataatcaagttgcaatagctatttcccacaatccagtttt 261  Q
    |||||||||| |||||| ||| || ||| |||||||||||||||| |||||||||||||||||| ||||| |||||    
T  7037656 atcttgagcataaagaagacactaagatctttgttgataatcaagctgcaatagctatttcccataatccggtttt 7037731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 6e-40; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 86 - 261
Target Start/End: Original strand, 32528772 - 32528947
Alignment:
Q  86 caagaaatagtggctcaatctactgccaaagcagagttttttgctgcaaatgctgctgtaaatcaagctatgcggctgacgaagatattgagtgatcttc 185  Q
    ||||||| |||||||||||| |||||  |||| |||||| |||||||||  |||||||| |||||||||||| ||||||  |||||||||||||| ||||    
T  32528772 caagaaacagtggctcaatcaactgctgaagcggagtttattgctgcaacggctgctgttaatcaagctatgtggctgagaaagatattgagtgaccttc 32528871  T
Q  186 atcttgagcagaaagaacacaataggatttttgttgataatcaagttgcaatagctatttcccacaatccagtttt 261  Q
    ||||||| || ||||||  || || ||| |||||||||||||||| ||||||||||||||| || |||||||||||    
T  32528872 atcttgaccacaaagaagccactaagatctttgttgataatcaagctgcaatagctatttctcataatccagtttt 32528947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 86 - 261
Target Start/End: Original strand, 26344977 - 26345152
Alignment:
Q  86 caagaaatagtggctcaatctactgccaaagcagagttttttgctgcaaatgctgctgtaaatcaagctatgcggctgacgaagatattgagtgatcttc 185  Q
    ||||||| |||||||||||| |||||  |||| |||||| ||| |||||  |||||||| |||||||||||| ||||||  |||||||||||||| ||||    
T  26344977 caagaaacagtggctcaatcaactgctgaagcggagtttattgttgcaacggctgctgttaatcaagctatgtggctgagaaagatattgagtgaccttc 26345076  T
Q  186 atcttgagcagaaagaacacaataggatttttgttgataatcaagttgcaatagctatttcccacaatccagtttt 261  Q
    ||||||| || ||||||  || || ||| |||||||||||||||| ||||||||||||||| || |||| ||||||    
T  26345077 atcttgaccacaaagaagccactaagatctttgttgataatcaagctgcaatagctatttctcataatctagtttt 26345152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 32526810 - 32526877
Alignment:
Q  1 attgttgattttactcgtatgtgttagat---ctttataaagctcaagtcagaggtagcacaagtatt 65  Q
    |||| ||||||||| |||||||||| |||   |||| | |||| ||||||||||||||||||||||||    
T  32526810 attgatgattttacccgtatgtgttggattttctttctgaagcacaagtcagaggtagcacaagtatt 32526877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 86 - 261
Target Start/End: Complemental strand, 30506493 - 30506320
Alignment:
Q  86 caagaaatagtggctcaatctactgccaaagcagagttttttgctgcaaatgctgctgtaaatcaagctatgcggctgacgaagatattgagtgatcttc 185  Q
    ||||||| |||||||||||| |||||  |||| || ||| ||||| | | | ||||||||||||||||| |  || ||| |||||| |||||||||||||    
T  30506493 caagaaacagtggctcaatcaactgctgaagcggaatttgttgctactacttctgctgtaaatcaagctctatggttgaggaagattttgagtgatcttc 30506394  T
Q  186 atcttgagcagaaagaacacaataggatttttgttgataatcaagttgcaatagctatttcccacaatccagtttt 261  Q
    ||||||||||||||||| ||| ||  || |||||||||||||||| |||||||||||||||||| |||||||||||    
T  30506393 atcttgagcagaaagaagacatta--atatttgttgataatcaagctgcaatagctatttcccataatccagtttt 30506320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 95 - 229
Target Start/End: Original strand, 43373304 - 43373438
Alignment:
Q  95 gtggctcaatctactgccaaagcagagttttttgctgcaaatgctgctgtaaatcaagctatgcggctgacgaagatattgagtgatcttcatcttgagc 194  Q
    |||||||||||||||||| ||| ||||||| ||| ||||| || |||||||| |||||||||| ||||||  ||||||||   |||||||||||||||||    
T  43373304 gtggctcaatctactgccgaagtagagtttgttgttgcaactgttgctgtaagtcaagctatgtggctgagaaagatattagatgatcttcatcttgagc 43373403  T
Q  195 agaaagaacacaataggatttttgttgataatcaa 229  Q
    | |||||| ||| || ||| |||||||||||||||    
T  43373404 acaaagaagacactaagatatttgttgataatcaa 43373438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University