View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19358_low_108 (Length: 275)

Name: NF19358_low_108
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19358_low_108
NF19358_low_108
[»] chr6 (11 HSPs)
chr6 (169-260)||(1842693-1842784)
chr6 (71-131)||(6575798-6575858)
chr6 (71-124)||(33112714-33112767)
chr6 (79-131)||(10246983-10247035)
chr6 (8-55)||(1842580-1842627)
chr6 (75-130)||(11546841-11546896)
chr6 (80-132)||(34761235-34761287)
chr6 (71-131)||(15859172-15859234)
chr6 (72-118)||(12754419-12754465)
chr6 (75-122)||(14459932-14459979)
chr6 (79-131)||(33984835-33984887)
[»] chr1 (11 HSPs)
chr1 (71-124)||(12173034-12173087)
chr1 (71-131)||(19472873-19472933)
chr1 (71-121)||(28447802-28447852)
chr1 (71-124)||(26990681-26990734)
chr1 (71-132)||(38548749-38548810)
chr1 (80-130)||(42442015-42442065)
chr1 (85-131)||(46757379-46757425)
chr1 (79-131)||(8462976-8463028)
chr1 (71-130)||(43460779-43460838)
chr1 (71-130)||(31833965-31834024)
chr1 (79-124)||(26385043-26385087)
[»] chr7 (14 HSPs)
chr7 (71-131)||(46691844-46691904)
chr7 (75-131)||(1039066-1039122)
chr7 (75-131)||(30655601-30655657)
chr7 (77-131)||(36615808-36615862)
chr7 (75-124)||(42598066-42598115)
chr7 (80-132)||(33320773-33320825)
chr7 (75-124)||(31424775-31424824)
chr7 (75-125)||(32679024-32679074)
chr7 (81-131)||(49035862-49035912)
chr7 (72-131)||(19471089-19471148)
chr7 (79-131)||(22197745-22197797)
chr7 (79-131)||(22240024-22240076)
chr7 (78-122)||(41702948-41702992)
chr7 (71-118)||(43397730-43397776)
[»] chr8 (11 HSPs)
chr8 (76-131)||(40930834-40930889)
chr8 (71-131)||(25829264-25829323)
chr8 (71-122)||(22839336-22839387)
chr8 (75-131)||(13959222-13959278)
chr8 (72-124)||(24200622-24200674)
chr8 (71-131)||(38086413-38086473)
chr8 (72-122)||(5200482-5200532)
chr8 (75-124)||(584138-584187)
chr8 (71-119)||(30836127-30836175)
chr8 (75-109)||(7845135-7845169)
chr8 (83-122)||(44362940-44362979)
[»] chr3 (13 HSPs)
chr3 (77-131)||(28934741-28934795)
chr3 (71-124)||(31525443-31525496)
chr3 (71-124)||(43073045-43073098)
chr3 (76-132)||(10454356-10454412)
chr3 (71-131)||(52076138-52076198)
chr3 (76-131)||(44656229-44656284)
chr3 (80-131)||(47820975-47821026)
chr3 (72-130)||(20701222-20701280)
chr3 (71-124)||(9358748-9358801)
chr3 (78-130)||(28957022-28957074)
chr3 (75-125)||(8431421-8431471)
chr3 (72-125)||(42881961-42882013)
chr3 (84-121)||(53349486-53349523)
[»] chr4 (9 HSPs)
chr4 (71-124)||(15186980-15187033)
chr4 (71-131)||(16662306-16662366)
chr4 (71-124)||(25641268-25641321)
chr4 (76-131)||(16572143-16572198)
chr4 (71-130)||(47571570-47571629)
chr4 (72-131)||(32183353-32183413)
chr4 (71-111)||(45511401-45511441)
chr4 (71-131)||(42390771-42390831)
chr4 (78-121)||(55133114-55133154)
[»] chr5 (9 HSPs)
chr5 (71-131)||(23172973-23173032)
chr5 (71-122)||(9597753-9597804)
chr5 (78-132)||(22887283-22887337)
chr5 (80-124)||(9931804-9931848)
chr5 (72-125)||(42241589-42241642)
chr5 (78-130)||(25539896-25539947)
chr5 (79-131)||(10431133-10431185)
chr5 (77-131)||(819134-819188)
chr5 (71-131)||(3677789-3677848)
[»] chr2 (5 HSPs)
chr2 (76-131)||(41419693-41419748)
chr2 (75-124)||(22649068-22649117)
chr2 (76-132)||(14732344-14732400)
chr2 (75-130)||(38908743-38908798)
chr2 (85-131)||(41378216-41378262)
[»] scaffold0209 (1 HSPs)
scaffold0209 (75-124)||(12898-12947)
[»] scaffold0343 (1 HSPs)
scaffold0343 (72-121)||(7953-8002)


Alignment Details
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 169 - 260
Target Start/End: Original strand, 1842693 - 1842784
Alignment:
Q  169 aagtattttatcttacatttggtattcgttgtatttgcaatcnnnnnnnggttatattgcacattttgcaacttgctagtatagaaatatgt 260  Q
    ||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||| | ||||||||||||||||||||||    
T  1842693 aagtattttatcttacatttggtattcgttgtatttgcaatctttttttggttatattgcacatttttctacttgctagtatagaaatatgt 1842784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 6575858 - 6575798
Alignment:
Q  71 gaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcaggtgg 131  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||    
T  6575858 gaatcggcaaaatattattaatcaacaagcccgtgcaagaagcactaataagttcgggtgg 6575798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 33112714 - 33112767
Alignment:
Q  71 gaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagct 124  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  33112714 gaatcggcaaaatattattaaccaacaagcccgtgcaagacgcactaaaaagct 33112767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 10247035 - 10246983
Alignment:
Q  79 aaaatattattaaccaacaagcccgtgcaagaagcactaataagctcaggtgg 131  Q
    |||||||||||||||||||||||||||||||||||||||| | | ||||||||    
T  10247035 aaaatattattaaccaacaagcccgtgcaagaagcactaaaaggttcaggtgg 10246983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 1842580 - 1842627
Alignment:
Q  8 cacagaagataagaaagtgaaagggtttgtatagcagatctgtttatc 55  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||    
T  1842580 cacaaaagataagaaagtgaaagggtttgtatagcagagctgtttatc 1842627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 130
Target Start/End: Complemental strand, 11546896 - 11546841
Alignment:
Q  75 cggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcaggtg 130  Q
    ||||||||||||||||||  ||||||||||||||| ||||||||||||||| ||||    
T  11546896 cggcaaaatattattaactgacaagcccgtgcaagtagcactaataagctcgggtg 11546841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 80 - 132
Target Start/End: Complemental strand, 34761287 - 34761235
Alignment:
Q  80 aaatattattaaccaacaagcccgtgcaagaagcactaataagctcaggtggg 132  Q
    |||||||||||| | ||||||||||||||| ||||||||||||||| ||||||    
T  34761287 aaatattattaaacgacaagcccgtgcaagtagcactaataagctcgggtggg 34761235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 15859234 - 15859172
Alignment:
Q  71 gaatcggcaaaatattattaaccaa--caagcccgtgcaagaagcactaataagctcaggtgg 131  Q
    ||||||||||||||||||||| |||  ||||||||||||||  |||||||||||||| |||||    
T  15859234 gaatcggcaaaatattattaatcaaaacaagcccgtgcaaggcgcactaataagctcgggtgg 15859172  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 12754419 - 12754465
Alignment:
Q  72 aatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaa 118  Q
    ||||||||||| ||||||||||||||| ||||||||||| |||||||    
T  12754419 aatcggcaaaaaattattaaccaacaaacccgtgcaagacgcactaa 12754465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 122
Target Start/End: Complemental strand, 14459979 - 14459932
Alignment:
Q  75 cggcaaaatattattaaccaacaagcccgtgcaagaagcactaataag 122  Q
    |||||||||||||||| ||||| ||||||||| || ||||||||||||    
T  14459979 cggcaaaatattattagccaacgagcccgtgcgaggagcactaataag 14459932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 33984887 - 33984835
Alignment:
Q  79 aaaatattattaaccaacaagcccgtgcaagaagcactaataagctcaggtgg 131  Q
    |||||||||||| |||||||||||||   || ||||||||||||||| |||||    
T  33984887 aaaatattattagccaacaagcccgtatgaggagcactaataagctcgggtgg 33984835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 12173087 - 12173034
Alignment:
Q  71 gaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagct 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12173087 gaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagct 12173034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 19472933 - 19472873
Alignment:
Q  71 gaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcaggtgg 131  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  19472933 gaatcggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagctcgggtgg 19472873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 28447852 - 28447802
Alignment:
Q  71 gaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataa 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28447852 gaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataa 28447802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 26990734 - 26990681
Alignment:
Q  71 gaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagct 124  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26990734 gaatcggcaaaatattattaaccaataagcccgtgcaagaagcactaataagct 26990681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 132
Target Start/End: Complemental strand, 38548810 - 38548749
Alignment:
Q  71 gaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcaggtggg 132  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||    
T  38548810 gaatcggcaaaatattattaaccaacaaacccgtgcaagacgcactaataagctcgggtggg 38548749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 42442015 - 42442065
Alignment:
Q  80 aaatattattaaccaacaagcccgtgcaagaagcactaataagctcaggtg 130  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  42442015 aaatattattaaccaacaagtccgtgcaagaagcactaataagctcgggtg 42442065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 131
Target Start/End: Complemental strand, 46757425 - 46757379
Alignment:
Q  85 ttattaaccaacaagcccgtgcaagaagcactaataagctcaggtgg 131  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  46757425 ttattaaccaacaagcccgtgcaagatgcactaataagctcaggtgg 46757379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 8462976 - 8463028
Alignment:
Q  79 aaaatattattaaccaacaagcccgtgcaagaagcactaataagctcaggtgg 131  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||| |||||    
T  8462976 aaaatattattaaccaacaagctcgtgcaagaagcactaattagctcgggtgg 8463028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 130
Target Start/End: Complemental strand, 43460838 - 43460779
Alignment:
Q  71 gaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcaggtg 130  Q
    |||||| |||||||||||||||||||||| | |||| ||||||||||||||||| |||||    
T  43460838 gaatcgacaaaatattattaaccaacaagtctgtgcgagaagcactaataagctaaggtg 43460779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 130
Target Start/End: Complemental strand, 31834024 - 31833965
Alignment:
Q  71 gaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcaggtg 130  Q
    |||| |||||||||||||||||||||||  |||||||||| ||||||| |||||| ||||    
T  31834024 gaattggcaaaatattattaaccaacaaatccgtgcaagatgcactaacaagctcgggtg 31833965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 124
Target Start/End: Complemental strand, 26385087 - 26385043
Alignment:
Q  79 aaaatattattaaccaacaagcccgtgcaagaagcactaataagct 124  Q
    ||||||||||||||| |||||||||| |||||||| ||||||||||    
T  26385087 aaaatattattaaccgacaagcccgt-caagaagcgctaataagct 26385043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 131
Target Start/End: Original strand, 46691844 - 46691904
Alignment:
Q  71 gaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcaggtgg 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  46691844 gaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaacaagctcgggtgg 46691904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 1039066 - 1039122
Alignment:
Q  75 cggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcaggtgg 131  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  1039066 cggcaaaatattattaaccgacaagcccgtgcaagaagcactaataagctcgggtgg 1039122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 30655601 - 30655657
Alignment:
Q  75 cggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcaggtgg 131  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  30655601 cggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagctcgggtgg 30655657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 36615808 - 36615862
Alignment:
Q  77 gcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcaggtgg 131  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  36615808 gcaaaatattattacccaacaagcccgtgcaagaagcactaataagctcgggtgg 36615862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 75 - 124
Target Start/End: Complemental strand, 42598115 - 42598066
Alignment:
Q  75 cggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagct 124  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  42598115 cggcaaaatattattaaccaacaaacccgtgcaagaagcactaataagct 42598066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 132
Target Start/End: Complemental strand, 33320825 - 33320773
Alignment:
Q  80 aaatattattaaccaacaagcccgtgcaagaagcactaataagctcaggtggg 132  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  33320825 aaatattgttaaccaacaagcccgtgcaagaagcactaataagctcgggtggg 33320773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 31424775 - 31424824
Alignment:
Q  75 cggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagct 124  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  31424775 cggcaaaatattattaaccaacaaacccgtgcaagaaacactaataagct 31424824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 125
Target Start/End: Complemental strand, 32679074 - 32679024
Alignment:
Q  75 cggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctc 125  Q
    |||| |||| |||||||||||||||||||||||||| ||||||||||||||    
T  32679074 cggctaaattttattaaccaacaagcccgtgcaagacgcactaataagctc 32679024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 49035862 - 49035912
Alignment:
Q  81 aatattattaaccaacaagcccgtgcaagaagcactaataagctcaggtgg 131  Q
    ||||||||||||||||||| |||| |||||||||||||||||||| |||||    
T  49035862 aatattattaaccaacaagtccgtacaagaagcactaataagctcgggtgg 49035912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 19471089 - 19471148
Alignment:
Q  72 aatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcaggtgg 131  Q
    |||||| ||||||||||||| ||||||||| |||||||  |||||||||||||| |||||    
T  19471089 aatcgggaaaatattattaagcaacaagccggtgcaaggtgcactaataagctcgggtgg 19471148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 22197797 - 22197745
Alignment:
Q  79 aaaatattattaaccaacaagcccgtgcaagaagcactaataagctcaggtgg 131  Q
    ||||||||||||||||||||| |||||||||  ||||||| |||||| |||||    
T  22197797 aaaatattattaaccaacaagtccgtgcaaggtgcactaaaaagctcgggtgg 22197745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 22240024 - 22240076
Alignment:
Q  79 aaaatattattaaccaacaagcccgtgcaagaagcactaataagctcaggtgg 131  Q
    ||||||||||||||||||||| |||||||||  ||||||| |||||| |||||    
T  22240024 aaaatattattaaccaacaagtccgtgcaaggtgcactaaaaagctcgggtgg 22240076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 41702992 - 41702948
Alignment:
Q  78 caaaatattattaaccaacaagcccgtgcaagaagcactaataag 122  Q
    ||||||||||| ||||||| |||||||||||| ||||||||||||    
T  41702992 caaaatattatcaaccaactagcccgtgcaaggagcactaataag 41702948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 43397776 - 43397730
Alignment:
Q  71 gaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaa 118  Q
    ||||||||||| ||||||||||||| || |||||||||||||||||||    
T  43397776 gaatcggcaaa-tattattaaccaataaacccgtgcaagaagcactaa 43397730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 40930834 - 40930889
Alignment:
Q  76 ggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcaggtgg 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  40930834 ggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcgggtgg 40930889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 71 - 131
Target Start/End: Original strand, 25829264 - 25829323
Alignment:
Q  71 gaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcaggtgg 131  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  25829264 gaatcggcaaa-tattattaaccaacaagcccgtgcaagaagcactaataagctcgggtgg 25829323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 122
Target Start/End: Complemental strand, 22839387 - 22839336
Alignment:
Q  71 gaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataag 122  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  22839387 gaatcggcaaaatattattaaccaacaagcccgtgcaagacgcactaataag 22839336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 13959222 - 13959278
Alignment:
Q  75 cggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcaggtgg 131  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||    
T  13959222 cggcaaaatattattagccaacaagcccgtgcaagaagcaataataagctcgggtgg 13959278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 24200622 - 24200674
Alignment:
Q  72 aatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagct 124  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  24200622 aatcggcaaaatattattaatcaacaagtccgtgcaagaagcactaataagct 24200674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 71 - 131
Target Start/End: Original strand, 38086413 - 38086473
Alignment:
Q  71 gaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcaggtgg 131  Q
    ||||| ||||||||||||||||||| |||||||||||||| |||||||||||||| |||||    
T  38086413 gaatcagcaaaatattattaaccaataagcccgtgcaagacgcactaataagctcgggtgg 38086473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 5200482 - 5200532
Alignment:
Q  72 aatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataag 122  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  5200482 aatcggcaaaatattattaaccaacaagtccgtgcaagaaacactaataag 5200532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 584138 - 584187
Alignment:
Q  75 cggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagct 124  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  584138 cggcaaaatattattagccaacaagcccgtacaagaagcactaataagct 584187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 30836127 - 30836175
Alignment:
Q  71 gaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaat 119  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  30836127 gaatcggcaaaatattattaaccaacaagctcgtgcgagaagcactaat 30836175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 109
Target Start/End: Complemental strand, 7845169 - 7845135
Alignment:
Q  75 cggcaaaatattattaaccaacaagcccgtgcaag 109  Q
    |||||||||||||||||||||||||||||||||||    
T  7845169 cggcaaaatattattaaccaacaagcccgtgcaag 7845135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 122
Target Start/End: Original strand, 44362940 - 44362979
Alignment:
Q  83 tattattaaccaacaagcccgtgcaagaagcactaataag 122  Q
    |||||||||||||||| || ||||||||||||||||||||    
T  44362940 tattattaaccaacaatcctgtgcaagaagcactaataag 44362979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 28934741 - 28934795
Alignment:
Q  77 gcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcaggtgg 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28934741 gcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcgggtgg 28934795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 31525496 - 31525443
Alignment:
Q  71 gaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagct 124  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31525496 gaatcggcaaaatattattaaccaacaagcctgtgcaagaagcactaataagct 31525443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 43073045 - 43073098
Alignment:
Q  71 gaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagct 124  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  43073045 gaatcggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagct 43073098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 10454412 - 10454356
Alignment:
Q  76 ggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcaggtggg 132  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  10454412 ggcaaaatattattaaccaacaagcccgtgcaaggagcactaataagctcgggtggg 10454356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 52076198 - 52076138
Alignment:
Q  71 gaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcaggtgg 131  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||    
T  52076198 gaatcggcaaaatattactaaccaacaagcccgtgcgagaagcactaataagctcgggtgg 52076138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 44656229 - 44656284
Alignment:
Q  76 ggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcaggtgg 131  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||    
T  44656229 ggcaaaatattattaaccaacaagcccgtgcaagatgcacaaataagctcgggtgg 44656284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 80 - 131
Target Start/End: Complemental strand, 47821026 - 47820975
Alignment:
Q  80 aaatattattaaccaacaagcccgtgcaagaagcactaataagctcaggtgg 131  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  47821026 aaatattattaaccaacaagcccgtgcaagacgcactaataagctcgggtgg 47820975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 20701280 - 20701222
Alignment:
Q  72 aatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcaggtg 130  Q
    |||| |||||||||||||||||||| ||||||| |||||||||||||||||||| ||||    
T  20701280 aatcagcaaaatattattaaccaacgagcccgtacaagaagcactaataagctcgggtg 20701222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 9358748 - 9358801
Alignment:
Q  71 gaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagct 124  Q
    |||||||||||||||||||| ||||||||||||||| ||||| |||||||||||    
T  9358748 gaatcggcaaaatattattacccaacaagcccgtgcgagaagtactaataagct 9358801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 28957074 - 28957022
Alignment:
Q  78 caaaatattattaaccaacaagcccgtgcaagaagcactaataagctcaggtg 130  Q
    |||||||||||||||||||||| ||||||||||| |||| |||||||| ||||    
T  28957074 caaaatattattaaccaacaagtccgtgcaagaaacactgataagctcgggtg 28957022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 125
Target Start/End: Original strand, 8431421 - 8431471
Alignment:
Q  75 cggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctc 125  Q
    ||||||||||||||| | ||| |||||||||||||| ||||||| ||||||    
T  8431421 cggcaaaatattattgatcaagaagcccgtgcaagatgcactaacaagctc 8431471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 42882013 - 42881961
Alignment:
Q  72 aatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctc 125  Q
    |||||||||||||||||| |||||||||| ||| ||||| ||||||| ||||||    
T  42882013 aatcggcaaaatattatt-accaacaagctcgtacaagatgcactaaaaagctc 42881961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 53349523 - 53349486
Alignment:
Q  84 attattaaccaacaagcccgtgcaagaagcactaataa 121  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  53349523 attattaaccaacaagctcatgcaagaagcactaataa 53349486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 15186980 - 15187033
Alignment:
Q  71 gaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagct 124  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  15186980 gaatcggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagct 15187033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 71 - 131
Target Start/End: Original strand, 16662306 - 16662366
Alignment:
Q  71 gaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcaggtgg 131  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  16662306 gaatcagcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctaaggtgg 16662366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 25641268 - 25641321
Alignment:
Q  71 gaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagct 124  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  25641268 gaatcggcaaaatgttattaaccaacaagcccgtgcaagaagcactaaaaagct 25641321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 76 - 131
Target Start/End: Complemental strand, 16572198 - 16572143
Alignment:
Q  76 ggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcaggtgg 131  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||    
T  16572198 ggcaaaatattattaaccaacaagcccgtgcgagatgcactaataagctcgggtgg 16572143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 130
Target Start/End: Original strand, 47571570 - 47571629
Alignment:
Q  71 gaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcaggtg 130  Q
    |||||||||||||||||||||||||||| |||||| ||| ||||||||||||||| ||||    
T  47571570 gaatcggcaaaatattattaaccaacaaacccgtggaaggagcactaataagctcgggtg 47571629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 72 - 131
Target Start/End: Complemental strand, 32183413 - 32183353
Alignment:
Q  72 aatcggcaaaatattattaaccaa-caagcccgtgcaagaagcactaataagctcaggtgg 131  Q
    |||||||||||||||||||||||| ||||||||||||||  |||||||||||||| |||||    
T  32183413 aatcggcaaaatattattaaccaaacaagcccgtgcaaggcgcactaataagctcgggtgg 32183353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 45511401 - 45511441
Alignment:
Q  71 gaatcggcaaaatattattaaccaacaagcccgtgcaagaa 111  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  45511401 gaatcagcaaaatattattaaccaacaagcccgtgcaagaa 45511441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 131
Target Start/End: Original strand, 42390771 - 42390831
Alignment:
Q  71 gaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcaggtgg 131  Q
    |||||||| |||| |||||  ||||||||||||||||||| | |||||||||||| |||||    
T  42390771 gaatcggctaaattttattttccaacaagcccgtgcaagacgtactaataagctcgggtgg 42390831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 121
Target Start/End: Original strand, 55133114 - 55133154
Alignment:
Q  78 caaaatattattaaccaacaagcccgtgcaagaagcactaataa 121  Q
    ||||||||||||||||||   |||||||||||||||||||||||    
T  55133114 caaaatattattaaccaa---gcccgtgcaagaagcactaataa 55133154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 71 - 131
Target Start/End: Original strand, 23172973 - 23173032
Alignment:
Q  71 gaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcaggtgg 131  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  23172973 gaatcggcaaa-tattattaaccaacaagcccgtgcaagaagcactaataagctcgggtgg 23173032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 122
Target Start/End: Original strand, 9597753 - 9597804
Alignment:
Q  71 gaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataag 122  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9597753 gaatcggcaaaatattattaaccaacaagcctgtgcaagaagcactaataag 9597804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 132
Target Start/End: Complemental strand, 22887337 - 22887283
Alignment:
Q  78 caaaatattattaaccaacaagcccgtgcaagaagcactaataagctcaggtggg 132  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||    
T  22887337 caaaatattattaaccaacaagcccgtgcgagatgcactaataagctcgggtggg 22887283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 9931804 - 9931848
Alignment:
Q  80 aaatattattaaccaacaagcccgtgcaagaagcactaataagct 124  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  9931804 aaatattattaaccaacaagcccgtgcaagaagcactaacaagct 9931848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 42241589 - 42241642
Alignment:
Q  72 aatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctc 125  Q
    |||||||||||||||||||||||| ||| ||| |||||| ||||||||||||||    
T  42241589 aatcggcaaaatattattaaccaataagtccgggcaagatgcactaataagctc 42241642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 25539947 - 25539896
Alignment:
Q  78 caaaatattattaaccaacaagcccgtgcaagaagcactaataagctcaggtg 130  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||| ||||    
T  25539947 caaaatattatta-ccaacaagcccgtgcaagaagcattaataagctcgggtg 25539896  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 10431185 - 10431133
Alignment:
Q  79 aaaatattattaaccaacaagcccgtgcaagaagcactaataagctcaggtgg 131  Q
    ||||||||||||| |||||| ||||||||||||||| ||||||| || |||||    
T  10431185 aaaatattattaatcaacaaacccgtgcaagaagcattaataagttcgggtgg 10431133  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 819134 - 819188
Alignment:
Q  77 gcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcaggtgg 131  Q
    |||||||||||||| |||| ||| ||||| |||||||||||||||| || |||||    
T  819134 gcaaaatattattacccaataagtccgtgtaagaagcactaataagttcgggtgg 819188  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 131
Target Start/End: Original strand, 3677789 - 3677848
Alignment:
Q  71 gaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcaggtgg 131  Q
    ||||| |||| ||||||||| ||||||||||| ||| ||| |||||||||||||| |||||    
T  3677789 gaatcagcaatatattatta-ccaacaagcccatgcgagatgcactaataagctcgggtgg 3677848  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 131
Target Start/End: Complemental strand, 41419748 - 41419693
Alignment:
Q  76 ggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcaggtgg 131  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  41419748 ggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagctcgggtgg 41419693  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 22649068 - 22649117
Alignment:
Q  75 cggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagct 124  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  22649068 cggcaaaattttattaaccaacaagcccgtgcaagaagtactaataagct 22649117  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 14732344 - 14732400
Alignment:
Q  76 ggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcaggtggg 132  Q
    ||||||||||||||||||||||||||||||| ||  |||||||||||||| ||||||    
T  14732344 ggcaaaatattattaaccaacaagcccgtgcgaggtgcactaataagctcgggtggg 14732400  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 130
Target Start/End: Complemental strand, 38908798 - 38908743
Alignment:
Q  75 cggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcaggtg 130  Q
    ||||||||||||||||||||| ||| |||||||||| |||||||||||||| ||||    
T  38908798 cggcaaaatattattaaccaataaggccgtgcaagatgcactaataagctcgggtg 38908743  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 131
Target Start/End: Original strand, 41378216 - 41378262
Alignment:
Q  85 ttattaaccaacaagcccgtgcaagaagcactaataagctcaggtgg 131  Q
    ||||||||||||||||||||| |||| |||||||||||||| |||||    
T  41378216 ttattaaccaacaagcccgtgaaagatgcactaataagctcgggtgg 41378262  T

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Target: scaffold0209 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 12898 - 12947
Alignment:
Q  75 cggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagct 124  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  12898 cggcaaaatattattagccaacaagcccgtacaagaagcactaataagct 12947  T

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Target: scaffold0343 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 8002 - 7953
Alignment:
Q  72 aatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataa 121  Q
    ||||||||||||||||||||||||||||||  ||||| | ||||||||||    
T  8002 aatcggcaaaatattattaaccaacaagcctatgcaaaatgcactaataa 7953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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