View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19358_low_109 (Length: 274)
Name: NF19358_low_109
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_109 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 44306822 - 44306588
Alignment:
| Q |
1 |
ttatctaagaatctatcagggtgttattaagaaggatgattttattacaaatgttaacactggtgagaagattcagattcttaccttgtgtaagagacat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44306822 |
ttatctaagaatctatcagggtgttattaagaaggatgattttattacaaatgttaacactggtgagaagattcagattcttaccttgtgtaagagacat |
44306723 |
T |
|
| Q |
101 |
gatgatgagattgagtatgctgatgaagctcatgctggagaaattgttatgttgttcgatgctcttcttaaatctggagatactttcactgatgggtctg |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
44306722 |
gatgatgagattgagtatgttgatgaagctcatgctggagaaattgttatgttgttcgatgctcttcttaaatctggagatacttttactgatgggtctg |
44306623 |
T |
|
| Q |
201 |
ttagatatacaatgacttctgcagatgttcctact |
235 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |
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| T |
44306622 |
ttagatatacaatgacttctgccgatgttcctact |
44306588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 43896368 - 43896137
Alignment:
| Q |
1 |
ttatctaagaatctatcagggtgttattaagaaggatgattttattacaaatgttaacactggtgagaagattcagattcttaccttgtgtaagagacat |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| | |||| |||||||||| |
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| T |
43896368 |
ttatctaagaatctatcagggtgttattaagaagggtgattttattacaaatgttaacactggtaagaagattcagattcctcgtttgtttaagagacat |
43896269 |
T |
|
| Q |
101 |
gatgatgagattgagtatgctgatgaagctcatgctggagaaattgttatgttgttcgatgctcttcttaaatctggagatactttcactgatgggtctg |
200 |
Q |
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|||||| |||||||| | | ||||||||||||||||||||| ||| |||| |||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
43896268 |
gatgataagattgaggaagttgatgaagctcatgctggagagattattattgtgttagatgctattcttaaatctggagatactttcactgatgggtctg |
43896169 |
T |
|
| Q |
201 |
ttagatatacaatgacttctgcagatgttcct |
232 |
Q |
| |
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|||||||||||||||||||||| ||||||||| |
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|
| T |
43896168 |
ttagatatacaatgacttctgccgatgttcct |
43896137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 4 - 235
Target Start/End: Complemental strand, 44301711 - 44301480
Alignment:
| Q |
4 |
tctaagaatctatcagggtgttattaagaaggatgattttattacaaatgttaacactggtgagaagattcagattcttaccttgtgtaagagacatgat |
103 |
Q |
| |
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|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||| |
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| T |
44301711 |
tctaagaatctatcagggtgttatcaagaagggtgattttattacaaatgttaacactggtgagaagattcagatttatagcttgtctaagagacatgat |
44301612 |
T |
|
| Q |
104 |
gatgagattgagtatgctgatgaagctcatgctggagaaattgttatgttgttcgatgctcttcttaaatctggagatactttcactgatgggtctgtta |
203 |
Q |
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|||| |||||||| || ||||||||||||||| |||||||||||||| |||| | | | |||||||||||||||||||||| |||||||||||||||| |
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| T |
44301611 |
gatgtgattgagtttgttgatgaagctcatgccggagaaattgttattgtgttagctattgttcttaaatctggagatacttttactgatgggtctgtta |
44301512 |
T |
|
| Q |
204 |
gatatacaatgacttctgcagatgttcctact |
235 |
Q |
| |
|
||||||||||| ||||||| |||||||||||| |
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|
| T |
44301511 |
gatatacaatgtcttctgccgatgttcctact |
44301480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 44312601 - 44312372
Alignment:
| Q |
1 |
ttatctaagaatctatcagggtgttattaagaaggatgattttattacaaatgttaacactggtgagaagattcagattcttaccttgtgtaagagacat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||| |||||| | ||| ||||||||||| |
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|
| T |
44312601 |
ttatctaagaatctatcagggtgttattaagaagggtgattttattacaaacgttaacactggtaagaagattaagattccttgtttgggtaagagacat |
44312502 |
T |
|
| Q |
101 |
gatgatgagattgagtatgctgatgaagctcatgctggagaaattgttatgttgttcgatgctcttcttaaatctggagatactttcactgatgggtctg |
200 |
Q |
| |
|
||| | ||||| || | | |||||||||||||||||||||||||||| | |||| | |||| |||||| ||||||||||||||| ||||||||||||| |
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| T |
44312501 |
tatggtaagattaaggaagttgatgaagctcatgctggagaaattgtttttgtgtttggtgctattcttagatctggagatacttttactgatgggtctg |
44312402 |
T |
|
| Q |
201 |
ttagatatacaatgacttctgcagatgttc |
230 |
Q |
| |
|
||||||||| |||||||||||| ||||||| |
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|
| T |
44312401 |
ttagatatataatgacttctgccgatgttc |
44312372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 43895669 - 43895619
Alignment:
| Q |
171 |
aatctggagatactttcactgatgggtctgttagatatacaatgacttctg |
221 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||| |||| |
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|
| T |
43895669 |
aatctggagatacttttgctgatgggtctgttagatattcaatgacctctg |
43895619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 44306093 - 44306043
Alignment:
| Q |
171 |
aatctggagatactttcactgatgggtctgttagatatacaatgacttctg |
221 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||| ||||||| |||| |
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|
| T |
44306093 |
aatctggagatacttttgctgatgggtccgttagatattcaatgacctctg |
44306043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 4084486 - 4084249
Alignment:
| Q |
1 |
ttatctaagaatctatcagggtgttattaagaaggatgattttattacaaatgttaacactggtgagaagattcagattcttaccttgtgtaagagacat |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||| |||||||| |||||| | |||| |||||||||| |
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|
| T |
4084486 |
ttatctaagaatctatcagggtgttatcaagaagggtgattttattacaaatgttaacaccggtaagaagattaagattcctcgtttgtttaagagacat |
4084387 |
T |
|
| Q |
101 |
gatgatgagattgagtatgctgatgaagctcatgctggagaaattgtta---tgtt---gttcgatgctcttcttaaatctggagatactttcactgatg |
194 |
Q |
| |
|
||| || |||| || | |||||||||||||||||||||| |||||| |||| ||| |||||| |||||||||||||||||||||| ||||| | |
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| T |
4084386 |
gataatacgattaaggcagttgatgaagctcatgctggagaacttgttattgtgttaaagtttgatgctattcttaaatctggagatacttttactgacg |
4084287 |
T |
|
| Q |
195 |
ggtctgttagatatacaatgacttctgcagatgttcct |
232 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||| |
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|
| T |
4084286 |
ggtctattagatatacaatgacttctgccgatgttcct |
4084249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 18701976 - 18701741
Alignment:
| Q |
1 |
ttatctaagaatctatcagggtgttattaagaaggatgattttattacaaatgttaacactggtgagaagattcagattcttaccttgtgtaagagac-a |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| | ||| | ||||||| | |
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|
| T |
18701976 |
ttatctaagaatctatcagggtgttattaagaagggtgattttattacaaatgttaacactggtaagaagattcagattcctcgtttgggcaagagacga |
18701877 |
T |
|
| Q |
100 |
tgatgatgagattgagtatgctgatgaagctcatgctggagaaattgttatgttgttcgatgctcttcttaaatctggagatactttcactg---atggg |
196 |
Q |
| |
|
| | || | || ||| | | |||||||||||||||||||||||||||| | | || ||||||| |||| |||||||||||||||| || | ||||| |
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|
| T |
18701876 |
agttaataaaatcgaggaagttgatgaagctcatgctggagaaattgtttttgtttttgatgctcatcttgaatctggagatacttttaccgccaatggg |
18701777 |
T |
|
| Q |
197 |
tctgttagatatacaatgacttctgcagatgttcct |
232 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
|
|
| T |
18701776 |
tctgttagatatacaatgacttctgctgatgttcct |
18701741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 8158992 - 8159230
Alignment:
| Q |
5 |
ctaagaatctatcagggtgttattaagaaggatgattttattacaaatgttaacactggtgagaagattcagattcttaccttgtgtaagagacatg--- |
101 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||| | ||| ||||||||| || |
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| T |
8158992 |
ctaagaatttatcagggtgttattaagaagggtgattttattacaaatgttaacactggtaagaagattgagattcctcgtttgggtaagagacgtgaac |
8159091 |
T |
|
| Q |
102 |
atgatgagattgagtatgctg------------------atgaagctcatgctggagaaattgttatgttgttcgatgctcttcttaaatctggagatac |
183 |
Q |
| |
|
||||||||| |||| | | || |||||||||||||||||||||||||| | |||| ||||||| |||| ||||||||||||| |
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|
| T |
8159092 |
atgatgagagtgaggaagttgataaaatcaaggaagttgatgaagctcatgctggagaaattgtttttgtgtttgatgctcatcttgaatctggagatac |
8159191 |
T |
|
| Q |
184 |
tttcactgatgggtctgttagatatacaatgacttctgc |
222 |
Q |
| |
|
||| || ||||||||||||||||||| |||||||||||| |
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|
| T |
8159192 |
ttttaccgatgggtctgttagatatataatgacttctgc |
8159230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 35856731 - 35856802
Alignment:
| Q |
2 |
tatctaagaatctatcagggtgttattaagaaggatgattttattacaaatgttaacactggtgagaagatt |
73 |
Q |
| |
|
|||||||||||||||||||| ||||||| || | ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
35856731 |
tatctaagaatctatcagggcgttattagaaaaggggattttattactaatgttaacactggtgagaagatt |
35856802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 219
Target Start/End: Complemental strand, 15040348 - 15040305
Alignment:
| Q |
176 |
ggagatactttcactgatgggtctgttagatatacaatgacttc |
219 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||||||||| |
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|
| T |
15040348 |
ggagatacttttactgatgggtctgttaaatatacaatgacttc |
15040305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 10541444 - 10541388
Alignment:
| Q |
7 |
aagaatctatcagggtgttattaagaaggatgattttattacaaatgttaacactgg |
63 |
Q |
| |
|
|||||||||| ||||||| ||| ||||| |||||||||||||||| ||||||||| |
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|
| T |
10541444 |
aagaatctatgagggtgtcattcggaagggagattttattacaaatgataacactgg |
10541388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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