View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_110 (Length: 271)
Name: NF19358_low_110
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_110 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 257
Target Start/End: Complemental strand, 16579227 - 16578981
Alignment:
| Q |
14 |
aggcatagaagatggatctggaagatggctagactgcatgtggcccccacctccgccaccgccactacttccaattccaggaggagaggaattaccacca |
113 |
Q |
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| T |
16579227 |
aggcatagaagatggatctggaagatggctagactgcatgtggcccccgccaccgccaccgccactacttccaattccaggaggagaggaattaccacca |
16579128 |
T |
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| Q |
114 |
ccaccagcaacctgatgtcctccatggaccc---caccgccaccgtcttcctcgtcttcctcaagtggtaatctttcataagtagcattagcaaaagtag |
210 |
Q |
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| T |
16579127 |
ccaccagcaacctgatgtcctccatggaccccaccaccaccaccgtcttcctcatcttcttcaagtggcaatctttcataggtagcattagcaaaagtag |
16579028 |
T |
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| Q |
211 |
cagcaataaccataacaggtccagcagcaatcaaaggtccaacaaca |
257 |
Q |
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| T |
16579027 |
cagcaataaccataacaggtccagcagcaatcaaaggtccaacaaca |
16578981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 32802828 - 32802890
Alignment:
| Q |
171 |
tcaagtggtaatctttcataagtagcattagcaaaagtagcagcaataaccataacaggtcca |
233 |
Q |
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| T |
32802828 |
tcaagtggaagtctctcataagtagcattagtaaaagtagcggcaataagcataacaggtcca |
32802890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 30679020 - 30679087
Alignment:
| Q |
180 |
aatctttcataagtagcattagcaaaagtagcagcaataaccataacaggtccagcagcaatcaaagg |
247 |
Q |
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| T |
30679020 |
aatctctcataggtagcattagcaaaagtagcagctataaccataacaggtccagaagcaaccaaagg |
30679087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 34484871 - 34484911
Alignment:
| Q |
183 |
ctttcataagtagcattagcaaaagtagcagcaataaccat |
223 |
Q |
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| T |
34484871 |
ctttcataagtagcattagcaaaagttgcagcaacaaccat |
34484911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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