View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19358_low_112 (Length: 271)
Name: NF19358_low_112
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_112 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 32224398 - 32224496
Alignment:
| Q |
23 |
ctgctgcatttggaactgttcataggaagaaaaggatggctaggcaaagaagatcttcatcttctaccatcactattcatctcaaaaatcttccttctt |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32224398 |
ctgctgcatttggaactgttcataggaagaaaaggatggctaggcaaagaagatcttcatcttctaccatcactattcatctcaaaaatcttccttctt |
32224496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 144 - 206
Target Start/End: Original strand, 32224525 - 32224587
Alignment:
| Q |
144 |
ctcgcacgtgccaatctctccaattccacctctttttcattctctccctcccgcacgtgtgag |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32224525 |
ctcgcacgtgccaatctctccaattccacctctttttcattctctccctcccgcacgtgtgag |
32224587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University