View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_113 (Length: 270)
Name: NF19358_low_113
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_113 |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 30035553 - 30035807
Alignment:
| Q |
1 |
tttaattattttaaggttaatataatatatatcagcttataattttgttatgtcattggcttttttattggcaatggatcttacgattcactgtttg-aa |
99 |
Q |
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| T |
30035553 |
tttaattattttaaggttaatataatatatatcagcttataattttgttatgtcattggcttttttattggcaatggatcttacgattcactgtttgtaa |
30035652 |
T |
|
| Q |
100 |
tatcgatttgataaccatgagtttcataattctctctaggtgtacaaaggggtgttccctgatggaaaaatagttgcaatcaaaagagctcagcaaggat |
199 |
Q |
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| T |
30035653 |
tatcgatttgataaccatgagtttcataattctctctaggtgtacaaaggggtgttccctgatggaaaaatagttgcaatcaaaagagctcagcaaggat |
30035752 |
T |
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| Q |
200 |
cgatgcaaggaggcctagagttcaagaatgaaattgaattgctttcaagagttca |
254 |
Q |
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| T |
30035753 |
cgatgcaaggaggcctagagttcaagaatgaaattgaattgctttcaagagttca |
30035807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 133 - 257
Target Start/End: Original strand, 30051872 - 30051996
Alignment:
| Q |
133 |
ctctaggtgtacaaaggggtgttccctgatggaaaaatagttgcaatcaaaagagctcagcaaggatcgatgcaaggaggcctagagttcaagaatgaaa |
232 |
Q |
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| T |
30051872 |
ctctaggtgtacagaggggtgttccctgatagaaaaatagttgcaatcaaaagagctcaggaaggatcaatgcaaggaggcctagagttcaagaatgaaa |
30051971 |
T |
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| Q |
233 |
ttgaattgctttcaagagttcatca |
257 |
Q |
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| T |
30051972 |
ttgagctgctttcaagagttcatca |
30051996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 29161171 - 29161234
Alignment:
| Q |
4 |
aattattttaaggttaatataatatatatcagcttataattttgttatgtcattggctttttta |
67 |
Q |
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||||||||| ||||| ||||| |||||||||||| |||||||||||||||||| | ||||||| |
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| T |
29161171 |
aattattttgaggttcatatatgatatatcagcttttaattttgttatgtcatttgttttttta |
29161234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 33895473 - 33895522
Alignment:
| Q |
4 |
aattattttaaggttaatataatatatatcagcttataattttgttatgt |
53 |
Q |
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||||||||||||||| ||||| ||||||||||||||||| ||||||||| |
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| T |
33895473 |
aattattttaaggttcatatataatatatcagcttataatattgttatgt |
33895522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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