View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_119 (Length: 266)
Name: NF19358_low_119
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_119 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 16064222 - 16063961
Alignment:
| Q |
1 |
tttagcactactccctatggttcttcttaagttctgttaactaacgttattaactgtttcaggtagtgtcatcatgagtctttcgatctttctgaatttc |
100 |
Q |
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| T |
16064222 |
tttagcactactccctctggttcttcttaagttctgtcagctaacgttattaactgttttaggtagtgtcatcatgagtctttcgatctttctgaatttc |
16064123 |
T |
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| Q |
101 |
gcaagcgatgtcaggttgattttatctcctaattcacataaaacattccccaagaatacatcattaatggatattagaacattgaagctccctggatctc |
200 |
Q |
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| T |
16064122 |
gcaagcgacgtcaggttgattttatctcctaattcacataaaacattccgcaagaatacaccattaatggatattagaacattgaagctccctggatctc |
16064023 |
T |
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| Q |
201 |
taatcttgttgttggagtttgtttcagtgttggtatggtaatctctaactgatgatgtccat |
262 |
Q |
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| T |
16064022 |
taatcttgatgttggagtttgtttcagtgttggtatggtaatctctaactaatgatatccat |
16063961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 69 - 262
Target Start/End: Complemental strand, 18385403 - 18385210
Alignment:
| Q |
69 |
tcatcatgagtctttcgatctttctgaatttcgcaagcgatgtcaggttgattttatctcctaattcacataaaacattccccaagaatacatcattaat |
168 |
Q |
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| T |
18385403 |
tcatcatgagtctttcaatctttctgaatgttgcaagtgacatcaggttgattttggctcctaaatcacataaagcatcacccaagaatacaccattaat |
18385304 |
T |
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| Q |
169 |
ggatattagaacattgaagctccctggatctctaatcttgttgttggagtttgtttcagtgttggtatggtaatctctaactgatgatgtccat |
262 |
Q |
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| T |
18385303 |
agagattggaacattgaagctcccactatctttaatcttgatgttggattttgttttagtgttggtatggtaatctccgactaatgatatccat |
18385210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 111 - 245
Target Start/End: Complemental strand, 16782484 - 16782350
Alignment:
| Q |
111 |
tcaggttgattttatctcctaattcacataaaacattccccaagaatacatcattaatggatattagaacattgaagctccctggatctctaatcttgtt |
210 |
Q |
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||||||||||||| ||||||||||||||||| |||||||||||| ||| ||||||| || ||| |||||||||||||||| |||| | |||||||| | |
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| T |
16782484 |
tcaggttgatttttgctcctaattcacataaacaattccccaagaaaacaccattaatagagattggaacattgaagctcccaggatatttaatcttgat |
16782385 |
T |
|
| Q |
211 |
gttggagtttgtttcagtgttggtatggtaatctc |
245 |
Q |
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| T |
16782384 |
gttggagtttggtttagtgttagtatggtaatctc |
16782350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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