View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_122 (Length: 258)
Name: NF19358_low_122
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_122 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 52164600 - 52164358
Alignment:
| Q |
1 |
ctccaacattcatcatgtccacaaaacatattcttccacttcgtttgttcatcaaacgcgttcaatctacgcgccgcaatcataacctccttcccctacc |
100 |
Q |
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| T |
52164600 |
ctccaacattcatcatgtccacaaaacatattcttccacttcgtttgttcatcaaacgcgttcaatctacgcgccgcaatcataacctccttcccctacc |
52164501 |
T |
|
| Q |
101 |
tcaaattccatctctacacctttgatgacactacggtcaccggactcatctcaacctccattcgttcagctcttgattgtcctctcaactacgctcgtag |
200 |
Q |
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| T |
52164500 |
tcaaattccatctctacacctttgatgacactacggtcaccggactcatctcaacctccattcgttcagctcttgattgtcctctcaactacgctcgtag |
52164401 |
T |
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| Q |
201 |
ctacttaccaagtctcttaccactttccgttaaccgcgttgtt |
243 |
Q |
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| T |
52164400 |
ctacttaccaagtctcttaccactttccgttaaccgcgttgtt |
52164358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 6635708 - 6635652
Alignment:
| Q |
1 |
ctccaacattcatcatgtccacaaaacatattcttccacttcgtttgttcatcaaac |
57 |
Q |
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|||||||| |||||||||||||||||||| |||| ||||| |||||||| |||||| |
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| T |
6635708 |
ctccaacactcatcatgtccacaaaacatcatctttcactttgtttgttcctcaaac |
6635652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 6635561 - 6635521
Alignment:
| Q |
148 |
atctcaacctccattcgttcagctcttgattgtcctctcaa |
188 |
Q |
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| T |
6635561 |
atctcaacctcgattcgatcagcacttgattgtcctctcaa |
6635521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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