View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_123 (Length: 257)
Name: NF19358_low_123
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_123 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 11 - 257
Target Start/End: Original strand, 26453765 - 26454011
Alignment:
| Q |
11 |
atactagcatcaacataagccattgataagttcaattttcaaaacaaaatgaagatgaatcatctcattatttgtatcttttttgctatagcaannnnnn |
110 |
Q |
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| T |
26453765 |
atactagcatcaacataagtcattgataagttcaattttcaaaataaaatgaagatgaatcatctcattatttgtatcttttttgctatagcaatttttt |
26453864 |
T |
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| Q |
111 |
natgtaaggcttcaattgcaaagccttttctacaatctccaacacaattcctcccatcaaccttagaggaaccaattgcaaaacccttagaggaacctga |
210 |
Q |
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| T |
26453865 |
tatgtaaggcttcaattgcaaagccttttctacaatctccaacacaattcctcccatcaaccttagaggaaccaattgcaaaacccttagaggaacctga |
26453964 |
T |
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| Q |
211 |
tgtaagaaaaggtaggaaaaagcctccgcgacatcctcaatcaccac |
257 |
Q |
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| T |
26453965 |
tgtaagaaaaggtaggaaaaagcctccacgacatcctcaatcaccac |
26454011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 11 - 183
Target Start/End: Original strand, 26504006 - 26504193
Alignment:
| Q |
11 |
atactagcatcaacataagccattgataa---gttcaattttcaaaacaaaatgaagatgaatcatctcattatttgtatcttttttgctatagcaannn |
107 |
Q |
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|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
26504006 |
atactaacatcaacataagccattgataataagttcaattttcaaaacaaaatgaagatgaatcatctcattatttgtatcttttttgctataacaattt |
26504105 |
T |
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| Q |
108 |
nnnnatgta------------aggcttcaattgcaaagccttttctacaatctccaacacaattcctcccatcaaccttagaggaacc |
183 |
Q |
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| T |
26504106 |
ttttatgtaatgctgctgaggatgcttcaattgcaaagccttttctaccatctccaacacaattcctcccatcagccttggaggaacc |
26504193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 26521751 - 26521658
Alignment:
| Q |
11 |
atactagcatcaacataagccattgataagttcaattttcaaaacaaaatgaagatgaatcatctcattatttgtatcttttttgctatagcaa |
104 |
Q |
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|||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26521751 |
atactaacatcaatataagccattgataagttcaatttttaaaacaaaatgaagatgaatcatctcattatatgtatcttttttgctatagcaa |
26521658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 26521577 - 26521647
Alignment:
| Q |
11 |
atactagcatcaacataagccattgataagttcaattttcaaaacaaaatgaagatgaatcatctcattat |
81 |
Q |
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|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26521577 |
atactagcattaatataagccattgataagttcaattttcaaaacaaaatgaagatgaatcatctcattat |
26521647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 195 - 257
Target Start/End: Original strand, 26504181 - 26504243
Alignment:
| Q |
195 |
ccttagaggaacctgatgtaagaaaaggtaggaaaaagcctccgcgacatcctcaatcaccac |
257 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||||| | || ||||| |||||||| |
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| T |
26504181 |
ccttggaggaacctgatgtgagaaaaggtaggaaaaagcctccaccacctcctcgatcaccac |
26504243 |
T |
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