View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19358_low_124 (Length: 256)

Name: NF19358_low_124
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19358_low_124
NF19358_low_124
[»] chr4 (4 HSPs)
chr4 (71-237)||(41942172-41942338)
chr4 (121-238)||(10335187-10335304)
chr4 (121-237)||(41951237-41951351)
chr4 (71-112)||(41951180-41951221)
[»] chr8 (2 HSPs)
chr8 (122-237)||(42076646-42076760)
chr8 (146-238)||(24424084-24424176)
[»] chr2 (4 HSPs)
chr2 (1-69)||(6231105-6231173)
chr2 (121-192)||(27976275-27976346)
chr2 (121-192)||(28062803-28062874)
chr2 (30-64)||(18645143-18645177)
[»] chr3 (3 HSPs)
chr3 (123-181)||(40887089-40887147)
chr3 (142-238)||(11646243-11646338)
chr3 (162-206)||(40887191-40887235)
[»] scaffold0022 (1 HSPs)
scaffold0022 (142-238)||(2919-3012)
[»] chr1 (1 HSPs)
chr1 (146-190)||(24302146-24302189)


Alignment Details
Target: chr4 (Bit Score: 99; Significance: 6e-49; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 71 - 237
Target Start/End: Original strand, 41942172 - 41942338
Alignment:
Q  71 gtaacgtcccagattttaaatccaagacatcacgtctaattcnnnnnnnnaaagacaagactattttgtttattcctaactacaacataacaaaaattaa 170  Q
    ||||||||||  ||||||||||||||||||||||||||||||        ||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  41942172 gtaacgtcccgaattttaaatccaagacatcacgtctaattcttttttttaaagacaagactattttgtttcttcctaactagaacataacaaaaattaa 41942271  T
Q  171 ttaaactaatttaattacaattgagaaaatccaaatttgattccccacagacacgcttcaaggaaaa 237  Q
    |||||||||||||||||||||| | ||||| |||||||| || ||| | ||||||||||||||||||    
T  41942272 ttaaactaatttaattacaattcaaaaaattcaaatttgttttcccgcggacacgcttcaaggaaaa 41942338  T

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Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 121 - 238
Target Start/End: Original strand, 10335187 - 10335304
Alignment:
Q  121 aaagacaagactattttgtttattcctaactacaacataacaaaaattaattaaactaatttaattacaattgagaaaatccaaatttgattccccacag 220  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| || ||| | |    
T  10335187 aaagacaagactattttgtttcttcctaactagaacataacaaaaattaattaaactaatttaattacaattcagaaaacccaaatttgttttcccgcgg 10335286  T
Q  221 acacgcttcaaggaaaac 238  Q
    ||||||||||||||||||    
T  10335287 acacgcttcaaggaaaac 10335304  T

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Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 121 - 237
Target Start/End: Original strand, 41951237 - 41951351
Alignment:
Q  121 aaagacaagactattttgtttattcctaactacaacataacaaaaattaattaaactaatttaattacaattgagaaaatccaaatttgattccccacag 220  Q
    ||||||||||| |||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||| | |||| ||||||||| || ||| | |    
T  41951237 aaagacaagacaattttgtttcatcctaactagaacataacaaaaattaattaaactaatttaattacaattca-aaaacccaaatttg-tttcccgcgg 41951334  T
Q  221 acacgcttcaaggaaaa 237  Q
    |||| ||||||||||||    
T  41951335 acacacttcaaggaaaa 41951351  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 41951180 - 41951221
Alignment:
Q  71 gtaacgtcccagattttaaatccaagacatcacgtctaattc 112  Q
    ||||| |||| ||||||||||||||||||| |||||||||||    
T  41951180 gtaacatcccggattttaaatccaagacattacgtctaattc 41951221  T

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Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 122 - 237
Target Start/End: Original strand, 42076646 - 42076760
Alignment:
Q  122 aagacaagactattttgtttattcctaactacaacataacaaaaattaattaaactaatttaattacaattgagaaaatccaaatttgattccccacaga 221  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||| | ||    
T  42076646 aagacaagactattttgtttcttcctaactagaacataacaaaaattaattaaactaatttaattacaattcagaaaacccaaatttgtttccccgcgga 42076745  T
Q  222 cacgcttcaaggaaaa 237  Q
    ||| ||| ||||||||    
T  42076746 cacactt-aaggaaaa 42076760  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 24424176 - 24424084
Alignment:
Q  146 ctaactacaacataacaaaaattaattaaactaatttaattacaattgagaaaatccaaatttgattccccac-agacacgcttcaaggaaaac 238  Q
    ||||||| ||| |||||||||| | ||||| || | ||||||||||| |||||| ||||||||| |||||| | | |||||||||||| |||||    
T  24424176 ctaactaaaacttaacaaaaat-agttaaattagtctaattacaattcagaaaaaccaaatttgtttccccgcaatacacgcttcaagcaaaac 24424084  T

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Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 6231105 - 6231173
Alignment:
Q  1 agtttggtagccgataaattactcttccataatgaaatataaacaaaaatgatagtagaaaagtctctc 69  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6231105 agtttgatagccgataaattactcttccataatgaaatataaacaaaaatgatagtagaaaagtctctc 6231173  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 121 - 192
Target Start/End: Original strand, 27976275 - 27976346
Alignment:
Q  121 aaagacaagactattttgtttattcctaactacaacataacaaaaattaattaaactaatttaattacaatt 192  Q
    ||||||||||||||||||||| ||| |||||| ||||||||| |||||||||||||||||||||||||||||    
T  27976275 aaagacaagactattttgtttcttcataactagaacataacagaaattaattaaactaatttaattacaatt 27976346  T

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Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 121 - 192
Target Start/End: Original strand, 28062803 - 28062874
Alignment:
Q  121 aaagacaagactattttgtttattcctaactacaacataacaaaaattaattaaactaatttaattacaatt 192  Q
    ||||||||||||||||||||| ||| |||||| ||||||||| |||||||||||||||||||||||||||||    
T  28062803 aaagacaagactattttgtttcttcataactagaacataacagaaattaattaaactaatttaattacaatt 28062874  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 64
Target Start/End: Original strand, 18645143 - 18645177
Alignment:
Q  30 taatgaaatataaacaaaaatgatagtagaaaagt 64  Q
    ||||||||||||||||||||||||||| |||||||    
T  18645143 taatgaaatataaacaaaaatgatagttgaaaagt 18645177  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 40887089 - 40887147
Alignment:
Q  123 agacaagactattttgtttattcctaactacaacataacaaaaattaattaaactaatt 181  Q
    ||||||||||||||||||| ||| |||||| ||||||||||||||||| |||| |||||    
T  40887089 agacaagactattttgttttttcttaactagaacataacaaaaattaagtaaattaatt 40887147  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 238
Target Start/End: Original strand, 11646243 - 11646338
Alignment:
Q  142 attcctaactacaacataacaaaaattaattaaactaatttaattacaattgagaaaatccaaatttgattccccacagacacgcttcaaggaaaac 238  Q
    ||||||||||| | | |||||| ||| | |||||||||||||||||||||| |||||| ||||||||| |||||| |  |||||||| ||| |||||    
T  11646243 attcctaactagagcttaacaacaat-agttaaactaatttaattacaatttagaaaacccaaatttgtttccccgcgtacacgctttaagcaaaac 11646338  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 40887191 - 40887235
Alignment:
Q  162 aaaaattaattaaactaatttaattacaattgagaaaatccaaat 206  Q
    ||||||||| |||| |||||||||||||||| |||||| ||||||    
T  40887191 aaaaattaagtaaattaatttaattacaattcagaaaacccaaat 40887235  T

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Target: scaffold0022 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 238
Target Start/End: Complemental strand, 3012 - 2919
Alignment:
Q  142 attcctaactacaacataacaaaaattaattaaactaatttaattacaattgagaaaatccaaatttgattccccacagacacgcttcaaggaaaac 238  Q
    ||||||||||| ||| ||||||||  || |||||||||||||||||||||| | |||  ||||||||| || ||| || |||||| ||||| |||||    
T  3012 attcctaactagaacctaacaaaa--tagttaaactaatttaattacaattca-aaaccccaaatttgttttcccgcatacacgcatcaagcaaaac 2919  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 24302146 - 24302189
Alignment:
Q  146 ctaactacaacataacaaaaattaattaaactaatttaattacaa 190  Q
    ||||||||||| |||||||||| | ||||||||||||||||||||    
T  24302146 ctaactacaacttaacaaaaat-agttaaactaatttaattacaa 24302189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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