View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_125 (Length: 255)
Name: NF19358_low_125
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_125 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 14580622 - 14580403
Alignment:
| Q |
18 |
cacaaattcaacatgcacttcatcttctgatatatgcaaactcccaagatcttcttggtcttgggacacacatccttcaaacacaatcatttctcattgg |
117 |
Q |
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| T |
14580622 |
cacaaattcaatatgcacttcatcctctgatatatgcaaactcccaagatcttcttggtcttgggacacacatccttcaaacacaatcatttctcattgg |
14580523 |
T |
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| Q |
118 |
aatcttgaatgtgctagcacattcatcactggtttaccacaatcttctttctttataggttgtcttcttggttcttttttccttgcagcattagctgatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
14580522 |
aatcttgaatgtgctagcacattcatcactggtttaccacaatcttctttctttataggttgtcttcttggttctttttttcttgcagcattagctgatt |
14580423 |
T |
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| Q |
218 |
cgtctattggtagaaaaaac |
237 |
Q |
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| |||||||||||||||||| |
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| T |
14580422 |
catctattggtagaaaaaac |
14580403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 14542965 - 14543184
Alignment:
| Q |
18 |
cacaaattcaacatgcacttcatcttctgatatatgcaaactcccaagatcttcttggtcttgggacacacatccttcaaacacaatcatttctcattgg |
117 |
Q |
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||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14542965 |
cacaaattcaatatgcacttcatcctctgatatatgcaaactcccaagatcttcttggtcttgggacacacatccttcaaacacaatcatttctcattgg |
14543064 |
T |
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| Q |
118 |
aatcttgaatgtgctagcacattcatcactggtttaccacaatcttctttctttataggttgtcttcttggttcttttttccttgcagcattagctgatt |
217 |
Q |
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| T |
14543065 |
aatcttgaatgtgctagcacattcatcactggtttaccacaatcttctttctttataggttgtcttcttggttctttttttcttgcagcattagctgatt |
14543164 |
T |
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| Q |
218 |
cgtctattggtagaaaaaac |
237 |
Q |
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| |||||||| ||||||||| |
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| T |
14543165 |
catctattggcagaaaaaac |
14543184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 6 - 237
Target Start/End: Complemental strand, 34263845 - 34263614
Alignment:
| Q |
6 |
cacaaacacaaacacaaattcaacatgcacttcatcttctgatatatgcaaactcccaagatcttcttggtcttgggacacacatccttcaaacacaatc |
105 |
Q |
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|||||||||||||||||||||| |||| ||||| || |||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34263845 |
cacaaacacaaacacaaattcatcatgtacttcgtcctctgatatttgcaaactctcaagatcttcttggtcttgggacacacacccttcaaacacaatc |
34263746 |
T |
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| Q |
106 |
atttctcattggaatcttgaatgtgctagcacattcatcactggtttaccacaatcttctttctttataggttgtcttcttggttcttttttccttgcag |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| || |||| | || || ||||||| |
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| T |
34263745 |
atttctcattggaatcttgaatgtgctagcacattcatcacaggtttaccacaatcttctttcttcataggttgtttttttggcttttcctttcttgcag |
34263646 |
T |
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| Q |
206 |
cattagctgattcgtctattggtagaaaaaac |
237 |
Q |
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||||||||||||| ||| ||||| |||||||| |
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| T |
34263645 |
cattagctgattcatcttttggtcgaaaaaac |
34263614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 6 - 222
Target Start/End: Complemental strand, 35622763 - 35622547
Alignment:
| Q |
6 |
cacaaacacaaacacaaattcaacatgcacttcatcttctgatatatgcaaactcccaagatcttcttggtcttgggacacacatccttcaaacacaatc |
105 |
Q |
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|||||||||||||||||||||| |||| ||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
35622763 |
cacaaacacaaacacaaattcatcatgttcttcatcctctgatatttgcaaactcccaagatcctcttggtcttgggacacacactcttcaaacacaatc |
35622664 |
T |
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| Q |
106 |
atttctcattggaatcttgaatgtgctagcacattcatcactggtttaccacaatcttctttctttataggttgtcttcttggttcttttttccttgcag |
205 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| | ||| |||||||||||||||| || ||||||| |
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| T |
35622663 |
atttcttattggaatcttgaatgtgctagcacattcgtcataggtttaccacaatcttctttcttcacaggctgtcttcttggttcttcctttcttgcag |
35622564 |
T |
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| Q |
206 |
cattagctgattcgtct |
222 |
Q |
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|||||||||| |||||| |
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| T |
35622563 |
cattagctgactcgtct |
35622547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 11 - 145
Target Start/End: Original strand, 37599918 - 37600052
Alignment:
| Q |
11 |
acacaaacacaaattcaacatgcacttcatcttctgatatatgcaaactcccaagatcttcttggtcttgggacacacatccttcaaacacaatcatttc |
110 |
Q |
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||||||||||||||||| |||| ||| |||| |||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37599918 |
acacaaacacaaattcatcatgtactccatcctctgatatttgcaaactctagagatcttcttggtcttgggacacacacccttcaaacacaatcatttc |
37600017 |
T |
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| Q |
111 |
tcattggaatcttgaatgtgctagcacattcatca |
145 |
Q |
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| | |||||||||||||||| || ||||||||||| |
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| T |
37600018 |
taactggaatcttgaatgtgttaacacattcatca |
37600052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 100 - 195
Target Start/End: Original strand, 10404054 - 10404149
Alignment:
| Q |
100 |
acaatcatttctcattggaatcttgaatgtgctagcacattcatcactggtttaccacaatcttctttctttataggttgtcttcttggttctttt |
195 |
Q |
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|||||||| ||||| |||| |||||||||||| || | |||||||| ||||||||||||||||| ||||| |||||||| || ||||||||||| |
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| T |
10404054 |
acaatcatatctcaatggagtcttgaatgtgcaagtagcttcatcacaggtttaccacaatcttcattcttcataggttgcctaattggttctttt |
10404149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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