View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_129 (Length: 251)
Name: NF19358_low_129
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_129 |
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Alignment Details
Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 141 - 245
Target Start/End: Original strand, 7013056 - 7013160
Alignment:
| Q |
141 |
tcgacaaaaatacagttatatgcattaattgatttcggccatcaatttaagatcaatcggctctaattacaccttcaccaaatcatctttaaataacctc |
240 |
Q |
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| T |
7013056 |
tcgacaaaaatacatttatatgcattaattgattttggccatcaatttaagatcaatcgactctaattacaccttcaccaaatcatctttaattaacctc |
7013155 |
T |
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| Q |
241 |
ggact |
245 |
Q |
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||||| |
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| T |
7013156 |
ggact |
7013160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 7012982 - 7013057
Alignment:
| Q |
10 |
aacaaaatgtacatcaaatgacctatcacattaattagctttgccttctagctcaagggacaaagttcaaatcctc |
85 |
Q |
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| T |
7012982 |
aacaaaatgtacatcaaatgacctatcacattaattagctttgccttctagctcaagggacaaagttcaaatcctc |
7013057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 33975332 - 33975268
Alignment:
| Q |
162 |
gcattaattgatttcggccatcaatttaagatcaatcggctctaattacaccttcaccaaatcat |
226 |
Q |
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||||||||| ||||||||||| |||| || ||| ||||||| ||||||||||||| ||||||| |
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| T |
33975332 |
gcattaatttatttcggccattgatttgaggtcagtcggctcacattacaccttcactaaatcat |
33975268 |
T |
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