View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_130 (Length: 250)
Name: NF19358_low_130
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_130 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 12596922 - 12596684
Alignment:
| Q |
1 |
acacttgtgagatattgaaaccaaacacaaaaagtccatgttcaaagacaagcacttgtgacataatgaaaccaaacatagttgttttcagccaattgat |
100 |
Q |
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| T |
12596922 |
acacttgtgagatattgaaaccaaacacaaaaagtccatgttcaaagacaagcacttgtgacataatgaaaccaaacatagttgttttcagccaattgat |
12596823 |
T |
|
| Q |
101 |
gggaaaagtaaaaaatattttaagaacaaacacagctgctgtatctttaatgatcatgtaagataataaaagaaattcaaaacacgatgtagagaaattc |
200 |
Q |
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| T |
12596822 |
gggaaaagttaaaaatattttaagaacaaacacagctgctgtatctttaatgatcatgtaagataataaaagaaattcaaaacacgatgtagagaaattc |
12596723 |
T |
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| Q |
201 |
ttacggtatggtcggtcaatacatcaactacatcttcat |
239 |
Q |
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| T |
12596722 |
ttacggtatggtcggtcaatacatcaactacatcttcat |
12596684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 3313866 - 3313795
Alignment:
| Q |
168 |
aaaagaaattcaaaacacgatgtagagaaattcttacggtatggtcggtcaatacatcaactacatcttcat |
239 |
Q |
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| T |
3313866 |
aaaataaattcaaaatgcaatgtagataaattcttacagtatggtcggtcagtacatcaactacatcctcat |
3313795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 213
Target Start/End: Original strand, 3392654 - 3392692
Alignment:
| Q |
175 |
attcaaaacacgatgtagagaaattcttacggtatggtc |
213 |
Q |
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| T |
3392654 |
attcaaaatacaatgtagagaaattcttacggtatggtc |
3392692 |
T |
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