View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19358_low_133 (Length: 250)

Name: NF19358_low_133
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19358_low_133
NF19358_low_133
[»] chr2 (27 HSPs)
chr2 (1-250)||(15008040-15008289)
chr2 (4-247)||(15023980-15024223)
chr2 (7-246)||(14520362-14520598)
chr2 (6-203)||(14850206-14850403)
chr2 (8-201)||(14552600-14552793)
chr2 (10-247)||(14567593-14567830)
chr2 (7-240)||(15003751-15003984)
chr2 (7-247)||(14547344-14547584)
chr2 (8-205)||(14529019-14529216)
chr2 (8-205)||(14543245-14543442)
chr2 (4-247)||(15019945-15020188)
chr2 (7-247)||(15013450-15013690)
chr2 (4-247)||(31969370-31969613)
chr2 (18-205)||(14512569-14512756)
chr2 (7-180)||(14534269-14534442)
chr2 (8-244)||(14525119-14525355)
chr2 (7-247)||(14847502-14847737)
chr2 (8-69)||(14495101-14495162)
chr2 (20-69)||(14480917-14480966)
chr2 (9-69)||(14502588-14502648)
chr2 (8-75)||(14475717-14475784)
chr2 (25-69)||(14153301-14153345)
chr2 (28-76)||(14168641-14168689)
chr2 (23-71)||(14485645-14485693)
chr2 (25-69)||(14145320-14145364)
chr2 (22-61)||(14158380-14158419)
chr2 (25-69)||(14161842-14161886)
[»] chr1 (1 HSPs)
chr1 (25-69)||(24741547-24741591)
[»] chr4 (1 HSPs)
chr4 (5-75)||(49553778-49553848)


Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 15008289 - 15008040
Alignment:
Q  1 ataactcctaaatgctcgaataacatcttcatcagaccaaccccatttcttaaaggcatcaactttctcatcccaaagttttttacttaaacctttcttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15008289 ataactcctaaatgctcgaataacatcttcatcagaccaaccccatttcttaaaggcatcaactttctcatcccaaagttttttacttaaacctttcttg 15008190  T
Q  101 gctgtcaaagcagtcccaaaagtagttgttgaaggatcaaaccctaaacgcttaacttcctccaatgacttaatcaaatcagttgaaccaaatatagatg 200  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  15008189 gctgtcaaagcagtcccaaaagtagttgttgaaggatgaaaccctaaacgcttaacttcctctaatgacttaatcaaatcagttgaaccaaatatagatg 15008090  T
Q  201 gccttttcagaagcaatttagcaatggcagaatcacaaactccaaaacca 250  Q
    |||||||| |||||||||||||||||| ||||||| ||||||||||||||    
T  15008089 gccttttctgaagcaatttagcaatggtagaatcagaaactccaaaacca 15008040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 4 - 247
Target Start/End: Complemental strand, 15024223 - 15023980
Alignment:
Q  4 actcctaaatgctcgaataacatcttcatcagaccaaccccatttcttaaaggcatcaactttctcatcccaaagttttttacttaaacctttcttggct 103  Q
    |||||||||||||  || || || |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| | |||||||||||||    
T  15024223 actcctaaatgcttcaacaatattttcatcagaccaaccccatttcttaaaggtgtcaactttctcatcccaaagttttttactcatacctttcttggct 15024124  T
Q  104 gtcaaagcagtcccaaaagtagttgttgaaggatcaaaccctaaacgcttaacttcctccaatgacttaatcaaatcagttgaaccaaatatagatggcc 203  Q
      |||||||  |||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||     
T  15024123 accaaagcaaccccaaaagaagctgttgaaggatcaaaccctaaactcttaacttcctccaatgacttaatcaaatcctttgaaccaaatatagatggct 15024024  T
Q  204 ttttcagaagcaatttagcaatggcagaatcacaaactccaaaa 247  Q
    | ||  |||||||| |||||||| |||||||| |||||||||||    
T  15024023 tattttgaagcaatctagcaatgacagaatcagaaactccaaaa 15023980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 7 - 246
Target Start/End: Complemental strand, 14520598 - 14520362
Alignment:
Q  7 cctaaatgctcgaataacatcttcatcagaccaaccccatttcttaaaggcatcaactttctcatcccaaagttttttacttaaacctttcttggctgtc 106  Q
    ||||||| |||| || ||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||   || |||||||||| ||    
T  14520598 cctaaatactcggatgacaacttcatcagaccagccccatttcttaaagacatcaactttctcatcccaaagttttttact---acatttcttggctatc 14520502  T
Q  107 aaagcagtcccaaaagtagttgttgaaggatcaaaccctaaacgcttaacttcctccaatgacttaatcaaatcagttgaaccaaatatagatggccttt 206  Q
    ||||||| ||||||||||||  ||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||     
T  14520501 aaagcagccccaaaagtagtctttgaaggatgaaaccctaaacacttaacttcctctaatgacttaatcaaatcagttgaaccaaatatagatgaccttg 14520402  T
Q  207 tcagaagcaatttagcaatggcagaatcacaaactccaaa 246  Q
    |  |||||||| ||||||||  ||||||| ||||||||||    
T  14520401 tttgaagcaatctagcaatgttagaatcagaaactccaaa 14520362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 6 - 203
Target Start/End: Original strand, 14850206 - 14850403
Alignment:
Q  6 tcctaaatgctcgaataacatcttcatcagaccaaccccatttcttaaaggcatcaactttctcatcccaaagttttttacttaaacctttcttggctgt 105  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||     
T  14850206 tcctaaatactcgaataacatcttcatcagaccaaccccatttcttaaaggcatcaactttctcatcccaaagttttttactcaaacctttctttgctgc 14850305  T
Q  106 caaagcagtcccaaaagtagttgttgaaggatcaaaccctaaacgcttaacttcctccaatgacttaatcaaatcagttgaaccaaatatagatggcc 203  Q
     |||||| | |||||| || |  ||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||| ||||||||    
T  14850306 taaagcaattccaaaactattctttgaaggatcaaaccctaaacacttaacttcctccaatgacttaatcaaatcctttgaaccaaatacagatggcc 14850403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 8 - 201
Target Start/End: Complemental strand, 14552793 - 14552600
Alignment:
Q  8 ctaaatgctcgaataacatcttcatcagaccaaccccatttcttaaaggcatcaactttctcatcccaaagttttttacttaaacctttcttggctgtca 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||| |||    
T  14552793 ctaaatgctcgaataacatcttcatcagaccaaccccatttcttaaagacatcaactttctcatcccaaagttttttactcatacctttcttggctatca 14552694  T
Q  108 aagcagtcccaaaagtagttgttgaaggatcaaaccctaaacgcttaacttcctccaatgacttaatcaaatcagttgaaccaaatatagatgg 201  Q
    |||||| ||||||||||||  |||  |||| |||||||||||  |||||||||||||||||||||||||||||  |||||| ||||||||||||    
T  14552693 aagcagccccaaaagtagtgattgggggatgaaaccctaaacctttaacttcctccaatgacttaatcaaatcctttgaacaaaatatagatgg 14552600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 10 - 247
Target Start/End: Complemental strand, 14567830 - 14567593
Alignment:
Q  10 aaatgctcgaataacatcttcatcagaccaaccccatttcttaaaggcatcaactttctcatcccaaagttttttacttaaacctttcttggctgtcaaa 109  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || | || ||||||||||| ||||    
T  14567830 aaatgcttgaataacagcttcatcagaccaaccccatttcttaaaggcatcaactttctcatcccaacgtttttttctcatacatttcttggctgccaaa 14567731  T
Q  110 gcagtcccaaaagtagttgttgaaggatcaaaccctaaacgcttaacttcctccaatgacttaatcaaatcagttgaaccaaatatagatggccttttca 209  Q
    |||  |||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||  ||||||||| |||||||||||||  |     
T  14567730 gcaaccccaaaagaagctgttgaaggatcaaaccctaaactcttaacttcctccaatgacttaatcaattcctttgaaccaactatagatggccttgact 14567631  T
Q  210 gaagcaatttagcaatggcagaatcacaaactccaaaa 247  Q
    |||||||  |||||||| ||  |||| |||||||||||    
T  14567630 gaagcaaactagcaatgacattatcagaaactccaaaa 14567593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 7 - 240
Target Start/End: Original strand, 15003751 - 15003984
Alignment:
Q  7 cctaaatgctcgaataacatcttcatcagaccaaccccatttcttaaaggcatcaactttctcatcccaaagttttttacttaaacctttcttggctgtc 106  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||| ||||||| | || || |||||   ||    
T  15003751 cctaaatactcgaataacatcttcatcagaccaaccccatttcttaaagacgtcaactttcttatcccaaagtattttactcatacattgcttggtcatc 15003850  T
Q  107 aaagcagtcccaaaagtagttgttgaaggatcaaaccctaaacgcttaacttcctccaatgacttaatcaaatcagttgaaccaaatatagatggccttt 206  Q
    ||||||||||||||||| || |||||||  ||||||||||||| ||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||    
T  15003851 aaagcagtcccaaaagtggtcgttgaagcgtcaaaccctaaacacttaacttcctccaatgacataatcaaatcctttgaaccaaatatagatggccttt 15003950  T
Q  207 tcagaagcaatttagcaatggcagaatcacaaac 240  Q
    |  |||||||| ||||||||| ||||||| ||||    
T  15003951 tttgaagcaatctagcaatggtagaatcagaaac 15003984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 7 - 247
Target Start/End: Complemental strand, 14547584 - 14547344
Alignment:
Q  7 cctaaatgctcgaataacatcttcatcagaccaaccccatttcttaaaggcatcaactttctcatcccaaagttttttacttaaacctttcttggctgtc 106  Q
    |||||||||| ||| || |  |||||||||||||||||||||||||||| |  | ||||||||||||||  || ||||||| | || |||||||||   |    
T  14547584 cctaaatgcttgaaaaaaagtttcatcagaccaaccccatttcttaaagacggcgactttctcatcccatcgtgttttactcatacatttcttggcgaac 14547485  T
Q  107 aaagcagtcccaaaagtagttgttgaaggatcaaaccctaaacgcttaacttcctccaatgacttaatcaaatcagttgaaccaaatatagatggccttt 206  Q
    ||||||| |||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14547484 aaagcagccccaaaagtagccgttgaaggatcaaaccctaaacacttaacttcctccaatgacttaatcaaatcagtcgaaccaaatatagatggccttt 14547385  T
Q  207 tcagaagcaatttagcaatggcagaatcacaaactccaaaa 247  Q
    |  |||||||  |||||||| |||||||| |||||||||||    
T  14547384 tttgaagcaagctagcaatgacagaatcagaaactccaaaa 14547344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 205
Target Start/End: Complemental strand, 14529216 - 14529019
Alignment:
Q  8 ctaaatgctcgaataacatcttcatcagaccaaccccatttcttaaaggcatcaactttctcatcccaaagttttttacttaaacctttcttggctgtca 107  Q
    |||||||||||||||| | | |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| | || |||||||||  |||    
T  14529216 ctaaatgctcgaataatagcctcatcagaccaaccccatttcttaaaggtatcaattttctcatcccaaagttttttactcatacatttcttggccatca 14529117  T
Q  108 aagcagtcccaaaagtagttgttgaaggatcaaaccctaaacgcttaacttcctccaatgacttaatcaaatcagttgaaccaaatatagatggcctt 205  Q
    |||||||||||||| ||||  ||||||||| ||||||||||  ||||||||||||||||||||||||||||||  |||||||||||||||| ||||||    
T  14529116 aagcagtcccaaaattagtcattgaaggatgaaaccctaaatccttaacttcctccaatgacttaatcaaatcctttgaaccaaatatagacggcctt 14529019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 205
Target Start/End: Complemental strand, 14543442 - 14543245
Alignment:
Q  8 ctaaatgctcgaataacatcttcatcagaccaaccccatttcttaaaggcatcaactttctcatcccaaagttttttacttaaacctttcttggctgtca 107  Q
    |||||||||||||||| | | |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| | || |||||||||  |||    
T  14543442 ctaaatgctcgaataatagcctcatcagaccaaccccatttcttaaaggtatcaattttctcatcccaaagttttttactcatacatttcttggccatca 14543343  T
Q  108 aagcagtcccaaaagtagttgttgaaggatcaaaccctaaacgcttaacttcctccaatgacttaatcaaatcagttgaaccaaatatagatggcctt 205  Q
    |||||||||||||| ||||  ||||||||| ||||||||||  ||||||||||||||||||||||||||||||  |||||||||||||||| ||||||    
T  14543342 aagcagtcccaaaattagtcattgaaggatgaaaccctaaatccttaacttcctccaatgacttaatcaaatcctttgaaccaaatatagacggcctt 14543245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 4 - 247
Target Start/End: Complemental strand, 15020188 - 15019945
Alignment:
Q  4 actcctaaatgctcgaataacatcttcatcagaccaaccccatttcttaaaggcatcaactttctcatcccaaagttttttacttaaacctttcttggct 103  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||| | ||||  ||   || |||||      
T  15020188 actcctaaatactcgaataacatcttcatcagaccaaccccatttcttaaagacgtcaactttcttatcccaaagtatgttacccaacaattgcttggtc 15020089  T
Q  104 gtcaaagcagtcccaaaagtagttgttgaaggatcaaaccctaaacgcttaacttcctccaatgacttaatcaaatcagttgaaccaaatatagatggcc 203  Q
     ||||||||||||||||||  || |||||||| | ||||||||||| ||||| |||||||||| ||||||||| |||| |||||||||||||||||||||    
T  15020088 atcaaagcagtcccaaaagcggtcgttgaaggtttaaaccctaaacccttaatttcctccaataacttaatcatatcatttgaaccaaatatagatggcc 15019989  T
Q  204 ttttcagaagcaatttagcaatggcagaatcacaaactccaaaa 247  Q
    || |  |||||||| ||||||||| ||||||| ||| |||||||    
T  15019988 ttgttcgaagcaatctagcaatggtagaatcagaaaatccaaaa 15019945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 7 - 247
Target Start/End: Complemental strand, 15013690 - 15013450
Alignment:
Q  7 cctaaatgctcgaataacatcttcatcagaccaaccccatttcttaaaggcatcaactttctcatcccaaagttttttacttaaacctttcttggctgtc 106  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||| | ||||| | ||  | |||||    |    
T  15013690 cctaaatactcgaataacatcttcatcagaccaaccccatttcttaaagacgtcaactttcttatcccaaagtatgttactcatacaatgcttggtcacc 15013591  T
Q  107 aaagcagtcccaaaagtagttgttgaaggatcaaaccctaaacgcttaacttcctccaatgacttaatcaaatcagttgaaccaaatatagatggccttt 206  Q
    ||||||||||||||||  |  |||||||| ||||||||||||| |||||| |||||||||||||||||||||||| |||||| | ||||||||  |||      
T  15013590 aaagcagtcccaaaagcggccgttgaagggtcaaaccctaaacccttaacgtcctccaatgacttaatcaaatcatttgaacaatatatagatttcctag 15013491  T
Q  207 tcagaagcaatttagcaatggcagaatcacaaactccaaaa 247  Q
    |  |||||||| |||||||||||||||||||||||||||||    
T  15013490 ttcgaagcaatctagcaatggcagaatcacaaactccaaaa 15013450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 4 - 247
Target Start/End: Complemental strand, 31969613 - 31969370
Alignment:
Q  4 actcctaaatgctcgaataacatcttcatcagaccaaccccatttcttaaaggcatcaactttctcatcccaaagttttttacttaaacctttcttggct 103  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||| | ||||| | || || |||||      
T  31969613 actcctaaatactcgaataacatcttcatcagaccaaccccatttcttaaagacgtcaactttcttatcccaaagtatgttactcatacattgcttggtc 31969514  T
Q  104 gtcaaagcagtcccaaaagtagttgttgaaggatcaaaccctaaacgcttaacttcctccaatgacttaatcaaatcagttgaaccaaatatagatggcc 203  Q
      ||||||||||||||| |   | |||||||| ||||||||||||| |||||| |||||||||||||||||||||||| |||||| | ||||||||  ||    
T  31969513 accaaagcagtcccaaatgcgatcgttgaagggtcaaaccctaaacccttaacgtcctccaatgacttaatcaaatcatttgaacaagatatagatttcc 31969414  T
Q  204 ttttcagaagcaatttagcaatggcagaatcacaaactccaaaa 247  Q
    |  |  |||||||| ||||||||||||||||| |||||||||||    
T  31969413 tagttcgaagcaatctagcaatggcagaatcataaactccaaaa 31969370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 14512756 - 14512569
Alignment:
Q  18 gaataacatcttcatcagaccaaccccatttcttaaaggcatcaactttctcatcccaaagttttttacttaaacctttcttggctgtcaaagcagtccc 117  Q
    |||||||| ||||| |||||||||||| |||||||||| |||||||||||| |||||||||||||||| | | ||||||||||||| ||||||||| ||     
T  14512756 gaataacagcttcaccagaccaaccccgtttcttaaagacatcaactttcttatcccaaagttttttagtcatacctttcttggctatcaaagcagccct 14512657  T
Q  118 aaaagtagttgttgaaggatcaaaccctaaacgcttaacttcctccaatgacttaatcaaatcagttgaaccaaatatagatggcctt 205  Q
    |||||||||   |||||||| ||||||||||  |||||||||||| |||||||||||||||||  |||||||||||||||| ||||||    
T  14512656 aaaagtagtcaatgaaggatgaaaccctaaatccttaacttcctctaatgacttaatcaaatcctttgaaccaaatatagacggcctt 14512569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 7 - 180
Target Start/End: Complemental strand, 14534442 - 14534269
Alignment:
Q  7 cctaaatgctcgaataacatcttcatcagaccaaccccatttcttaaaggcatcaactttctcatcccaaagttttttacttaaacctttcttggctgtc 106  Q
    ||||||||| || |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||   ||  || ||||||  |    
T  14534442 cctaaatgcccggataacatcttcatcagaccaaccccatttcttcaagacatcaactttctcatcccaaagttttttactcgtacagttattggctaac 14534343  T
Q  107 aaagcagtcccaaaagtagttgttgaaggatcaaaccctaaacgcttaacttcctccaatgacttaatcaaatc 180  Q
    ||||||  |||||||||||| |||||||||||||||||||||| ||||| |||||||||||| |||||||||||    
T  14534342 aaagcatacccaaaagtagtcgttgaaggatcaaaccctaaacccttaatttcctccaatgaattaatcaaatc 14534269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 8 - 244
Target Start/End: Complemental strand, 14525355 - 14525119
Alignment:
Q  8 ctaaatgctcgaataacatcttcatcagaccaaccccatttcttaaaggcatcaactttctcatcccaaagttttttacttaaacctttcttggctgtca 107  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||| ||||||| | || |||||| ||   ||    
T  14525355 ctaaatgctcgaataacatcttcatcagtccaaccccatttcttaaaaacatcaactttctcatcccaaagtgttttactcatacatttctttgcaacca 14525256  T
Q  108 aagcagtcccaaaagtagttgttgaaggatcaaaccctaaacgcttaacttcctccaatgacttaatcaaatcagttgaaccaaatatagatggcctttt 207  Q
    |||| | ||||||||| |  |||||| | | ||||||||||| ||||||||||||||| |   |||| |||||| |||| |||| ||||| ||| ||| |    
T  14525255 aagctgccccaaaagttgaagttgaaaggtgaaaccctaaacccttaacttcctccaaagtactaatgaaatcaattgatccaagtatagctggtcttgt 14525156  T
Q  208 cagaagcaatttagcaatggcagaatcacaaactcca 244  Q
    || ||||||| ||||||| || |||||||||||||||    
T  14525155 caaaagcaatctagcaatagcggaatcacaaactcca 14525119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 7 - 247
Target Start/End: Original strand, 14847502 - 14847737
Alignment:
Q  7 cctaaatgctcgaataacatcttcatcagaccaaccccatttcttaaaggcatcaactttctcatcccaaagttttttacttaaacctttcttggctgtc 106  Q
    |||||||||| ||| || | |||||||||||||||||| ||||| |||| ||||||||| |||||||||| || |||||||   || |||||||||| ||    
T  14847502 cctaaatgcttgaaaaatagcttcatcagaccaaccccgtttctcaaagacatcaactt-ctcatcccaacgtgttttactcctacatttcttggctatc 14847600  T
Q  107 aaagcagtcccaaaagtagttgttgaaggatcaaaccctaaacgcttaacttcctccaatgacttaatcaaatcagttgaaccaaatatagatggccttt 206  Q
    || | || ||| ||||||||  ||||||||||||| |||||||  ||||| |||    |||||||||||||| |||||  |||||||||||||| |||||    
T  14847601 aaggaagccccgaaagtagtcattgaaggatcaaaacctaaaccgttaacctcc----atgacttaatcaaaccagtttgaccaaatatagatgaccttt 14847696  T
Q  207 tcagaagcaatttagcaatggcagaatcacaaactccaaaa 247  Q
    |  |||||||| || |||||| |||||| ||||||||||||    
T  14847697 tttgaagcaatctatcaatggtagaatcgcaaactccaaaa 14847737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 14495162 - 14495101
Alignment:
Q  8 ctaaatgctcgaataacatcttcatcagaccaaccccatttcttaaaggcatcaactttctc 69  Q
    ||||||||| ||| |||||||||||| ||||||||||||||||| |||||||||||||||||    
T  14495162 ctaaatgcttgaagaacatcttcatccgaccaaccccatttcttcaaggcatcaactttctc 14495101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 14480917 - 14480966
Alignment:
Q  20 ataacatcttcatcagaccaaccccatttcttaaaggcatcaactttctc 69  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  14480917 ataatatcttcatcagaccaaccccacttcttaaaggcatcaactttctc 14480966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 14502648 - 14502588
Alignment:
Q  9 taaatgctcgaataacatcttcatcagaccaaccccatttcttaaaggcatcaactttctc 69  Q
    ||||||||  || |||||||||||| ||||||||||| |||||||||||||||||||||||    
T  14502648 taaatgcttcaagaacatcttcatccgaccaaccccacttcttaaaggcatcaactttctc 14502588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 14475717 - 14475784
Alignment:
Q  8 ctaaatgctcgaataacatcttcatcagaccaaccccatttcttaaaggcatcaactttctcatccca 75  Q
    ||||||||| | | |||||||||| ||||||||||||| |||||||||||||| |||||||| |||||    
T  14475717 ctaaatgcttgtagaacatcttcagcagaccaaccccacttcttaaaggcatcgactttctcttccca 14475784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 14153345 - 14153301
Alignment:
Q  25 atcttcatcagaccaaccccatttcttaaaggcatcaactttctc 69  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||    
T  14153345 atcttcttcagaccaaccccatttcttaaaagcatcaactttctc 14153301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 14168641 - 14168689
Alignment:
Q  28 ttcatcagaccaaccccatttcttaaaggcatcaactttctcatcccaa 76  Q
    |||||||||||||||||||||||||||| || |||||||| ||||||||    
T  14168641 ttcatcagaccaaccccatttcttaaagacaacaactttcgcatcccaa 14168689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 14485693 - 14485645
Alignment:
Q  23 acatcttcatcagaccaaccccatttcttaaaggcatcaactttctcat 71  Q
    ||||||||||||||||| ||||||||||||||| |||||||||| ||||    
T  14485693 acatcttcatcagaccatccccatttcttaaagacatcaactttttcat 14485645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 14145364 - 14145320
Alignment:
Q  25 atcttcatcagaccaaccccatttcttaaaggcatcaactttctc 69  Q
    |||||| |||||||||||||||||||| | |||||||||||||||    
T  14145364 atcttcttcagaccaaccccatttctttagggcatcaactttctc 14145320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 14158380 - 14158419
Alignment:
Q  22 aacatcttcatcagaccaaccccatttcttaaaggcatca 61  Q
    |||||||||||||||||||||| ||||| |||||||||||    
T  14158380 aacatcttcatcagaccaaccctatttcctaaaggcatca 14158419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 14161842 - 14161886
Alignment:
Q  25 atcttcatcagaccaaccccatttcttaaaggcatcaactttctc 69  Q
    ||||||||||||||| ||||||||||||||||  || ||||||||    
T  14161842 atcttcatcagaccagccccatttcttaaaggtgtcgactttctc 14161886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 24741591 - 24741547
Alignment:
Q  25 atcttcatcagaccaaccccatttcttaaaggcatcaactttctc 69  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||    
T  24741591 atcttcatcaaaccaaccccatttcttaaaggcatcaactgtctc 24741547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 49553848 - 49553778
Alignment:
Q  5 ctcctaaatgctcgaataacatcttcatcagaccaaccccatttcttaaaggcatcaactttctcatccca 75  Q
    |||||||||||| ||| ||  |||||||||||||||||||||||||||||    |||||||||||| ||||    
T  49553848 ctcctaaatgcttgaagaatgtcttcatcagaccaaccccatttcttaaaaatttcaactttctcagccca 49553778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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