View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_136 (Length: 249)
Name: NF19358_low_136
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_136 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 52405571 - 52405377
Alignment:
| Q |
1 |
cttcttctcccacaaggctacaagctcgttgaatgaaataatgttctttgggggctttatgtagagaatcttattcaatgtccttggatcatccacagct |
100 |
Q |
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| T |
52405571 |
cttcttctcccacaatgctacaagctcgttgaatgaaataatgttctttgggggctttatgtagagaatcttattcaatgtccttggatcatccacagct |
52405472 |
T |
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| Q |
101 |
ctaatggtgaatgttccaatgtcatcttccttgttgaaaaccgctgtacatattcatcaaatatgcaaattcaattaaacgtaaatacaatgaat |
195 |
Q |
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| T |
52405471 |
ctaatggtgaatgttccaatgtcatcttccttgttgaaaaccgctgtacatattcaacaaatatgcaaattaaattaaacataaatacaatgaat |
52405377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 156
Target Start/End: Complemental strand, 52408084 - 52407930
Alignment:
| Q |
2 |
ttcttctcccacaaggctacaagctcgttgaatgaaataatgttctttgggggctttatgtagagaatcttattcaatgtccttggatcatccacagctc |
101 |
Q |
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||||||||||||||||| | || ||||||||||| ||||||||| ||||| | | ||| ||||| || |||||||||||||| |||||||||||| |
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| T |
52408084 |
ttcttctcccacaaggcgataacatcgttgaatgagtaaatgttcttggggggtctgaggtaaagaattttgttcaatgtccttgggtcatccacagctt |
52407985 |
T |
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| Q |
102 |
taatggtgaatgttccaatgtcatcttccttgttgaaaaccgctgtacatattca |
156 |
Q |
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| T |
52407984 |
taatagtgtaggttccaatgtcttcttccttgttgaagacagctgcacaaattca |
52407930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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