View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_140 (Length: 245)
Name: NF19358_low_140
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_140 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 20 - 227
Target Start/End: Complemental strand, 44871860 - 44871653
Alignment:
| Q |
20 |
cagagaatctgaggaggaagcagaagcaatagcaattcctttggaatttgatgaatcaacttctgatgaggactctgaagcctctagtacaagttctgaa |
119 |
Q |
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| T |
44871860 |
cagagaatctgaggaggaagcagaagcaatagcaattccttcggaatttgatgaatcaacttctgatgaggactctgaagcctctagtacaagttctgaa |
44871761 |
T |
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| Q |
120 |
tcaacttctgatgaggattctgaaacctcttgttccagttctgttaaaaaagctacggttactatggtatcaacaacaatggaaaatgagaatcatgcga |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
44871760 |
tcaacttctgatgaggattctgaaacctcttgttccagttctgttaaaaaagctacggttactatggtatcaacaacaatggaaaatgagaatcatgtga |
44871661 |
T |
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| Q |
220 |
gtcaatct |
227 |
Q |
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|||||||| |
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| T |
44871660 |
gtcaatct |
44871653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 33 - 221
Target Start/End: Original strand, 47522432 - 47522620
Alignment:
| Q |
33 |
gaggaagcagaagcaatagcaattcctttggaatttgatgaatcaacttctgatgaggactctgaagcctctagtacaagttctgaatcaacttctgatg |
132 |
Q |
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|||||||||| ||||||| ||||| ||| |||| |||||||||||||||||||| || ||||||||||||||| | |||||||||||||||||||||| |
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| T |
47522432 |
gaggaagcagcagcaatatcaatttcttctgaatcagatgaatcaacttctgatgacgattctgaagcctctagtgccagttctgaatcaacttctgatg |
47522531 |
T |
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| Q |
133 |
aggattctgaaacctcttgttccagttctgttaaaaaagctacggttactatggtatcaacaacaatggaaaatgagaatcatgcgagt |
221 |
Q |
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| T |
47522532 |
aggattctgaaacctctagttccggggatgttaataaggctatagtaggtacggtaccaacatcaatggaaaatgagaagcatgtgagt |
47522620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 123 - 227
Target Start/End: Original strand, 47528146 - 47528250
Alignment:
| Q |
123 |
acttctgatgaggattctgaaacctcttgttccagttctgttaaaaaagctacggttactatggtatcaacaacaatggaaaatgagaatcatgcgagtc |
222 |
Q |
| |
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|||||| |||||||||||||| ||||| ||| || ||||||||||||||| |||||||||| |||||||| ||| |||||||||||| |||| || || |
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| T |
47528146 |
acttctaatgaggattctgaagcctctagtttcatttctgttaaaaaagccacggttactacattatcaacatcaacggaaaatgagaagcatgtgattc |
47528245 |
T |
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| Q |
223 |
aatct |
227 |
Q |
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||||| |
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| T |
47528246 |
aatct |
47528250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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