View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_143 (Length: 241)
Name: NF19358_low_143
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_143 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 42927447 - 42927677
Alignment:
| Q |
1 |
ttattttcttatgcatcataagtagtatctagttgctagaatggagttggatcaccagatcataaatacacaatctctttgnnnnnnnncctacttaatt |
100 |
Q |
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| T |
42927447 |
ttattttcttatgcatcataagtagtatctagttgctagaatggagttggatcaccagatcataaatacacaatctctttgaaaaaaaacctacttaatt |
42927546 |
T |
|
| Q |
101 |
tcaagttcaccggtaaggtataaacaagtacttcttcccgcccaaaacagattgatggagtatcg-ccaacgtctagctataacgttatttggtttatgg |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42927547 |
tcaagttcaccggtaaggtataaacaagtacttcttcccgcccaaaacagattgatggagtatcgaccaacgtctagctataacgttatttggtttatgg |
42927646 |
T |
|
| Q |
200 |
ttttgtattaaatgtggttgttgagagtatt |
230 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
42927647 |
ttttgtattaaatgtggttgttgagagtatt |
42927677 |
T |
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