View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19358_low_146 (Length: 239)
Name: NF19358_low_146
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_146 |
 | |
|
| [»] scaffold0199 (1 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 10985280 - 10985143
Alignment:
| Q |
19 |
gttacaccataacaactttaaacgagttgacaattggaagtctcaaacatattttagagaaagattgatccaaaaagatggatgatacattatgagctta |
118 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10985280 |
gttacaccataacaacttgaaacgagttgacaattggaagtctcaaacatattttagagaaagattgatccaaaaagacggatgatacattatgagctta |
10985181 |
T |
|
| Q |
119 |
cataacagctttcataacacacctgaaattgtaacaat |
156 |
Q |
| |
|
|||||||||||||| ||||||||||| ||| ||||||| |
|
|
| T |
10985180 |
cataacagctttcaaaacacacctgagattataacaat |
10985143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 9288 - 9356
Alignment:
| Q |
171 |
attaaatactgccttataaagagttattaattaatagcatatactatatcatgtcatccctcatgtttt |
239 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
9288 |
attaaatactaccttataaagagttattaattaatagcatatattatgtcatgtcatccctcatgtttt |
9356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 239
Target Start/End: Complemental strand, 38316510 - 38316455
Alignment:
| Q |
184 |
ttataaagagttattaattaatagcatatactatatcatgtcatccctcatgtttt |
239 |
Q |
| |
|
|||||||||| |||||||||||| |||||| ||||||||||| ||| |||||||| |
|
|
| T |
38316510 |
ttataaagagatattaattaatatcatatattatatcatgtcgccccccatgtttt |
38316455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University