View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_149 (Length: 238)
Name: NF19358_low_149
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_149 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 30697075 - 30697292
Alignment:
| Q |
5 |
gagtttgttgtcatgcctattcttatttaatttctaagaaacctaattttctatttaagtcttccgaataaacccaattacctaaatattattactatat |
104 |
Q |
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| T |
30697075 |
gagtttgttaccatgcctactcttatttaatttctaagaaacctaattttctatttaagtcttctgaataaacccaataacctaaatattattactatat |
30697174 |
T |
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| Q |
105 |
gcactccacatcttcagtaagcgacttcctcaacccgtgattcttctgactttttcaagctctcacgatacgatctaaaagtccatgattcaacttaaac |
204 |
Q |
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| T |
30697175 |
gcactccacatcttcagtaagcgacttccttaacccgtgattcttccgactttttcaagctctcacgatacgatctaaaagtccatgattcaacttaaac |
30697274 |
T |
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| Q |
205 |
acaattgaaccacttctg |
222 |
Q |
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| T |
30697275 |
acgattgaaccacttctg |
30697292 |
T |
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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 88 - 178
Target Start/End: Complemental strand, 26166603 - 26166513
Alignment:
| Q |
88 |
aaatattattactatatgcactccacatcttcagtaagcgacttcctcaacccgtgattcttctgactttttcaagctctcacgatacgat |
178 |
Q |
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| T |
26166603 |
aaatattattcatatatgcactccgcaccttcagtaagcgacttcctcaacgtgtggtacttctaaccttttccatctctcacgatgcgat |
26166513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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