View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19358_low_150 (Length: 238)
Name: NF19358_low_150
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_150 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 11720142 - 11720362
Alignment:
| Q |
1 |
ttccaatatttctttgatagtgaatgagccctataggaaacacaaacacatctcccttttgtagtactttcttaaagtggcggttttcaggatttgacgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11720142 |
ttccaatatttctttgatagtgaatgagccctataggaaacacaaacacatctcccttttgtagtactttcttaaagtggcggttttcaggatttgacgt |
11720241 |
T |
|
| Q |
101 |
gatgaatccaacttctaacgtgccttcgagaacagtgaatatttcagtggcacggggatgtgagtgaggagggttaacaccccatggtgctatgtcgaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11720242 |
gatgaatccaacttctaacgtgccttcgagaacagtgaatatttcagtggcacggggatgtgagtgaggagggttaacaccccatggtgctatgtcgaca |
11720341 |
T |
|
| Q |
201 |
cgagccatggagattcctagt |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
11720342 |
cgagccatggagattcctagt |
11720362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 6 - 221
Target Start/End: Original strand, 11672017 - 11672232
Alignment:
| Q |
6 |
atatttctttgatagtgaatgagccctataggaaacacaaacacatctcccttttgtagtactttcttaaagtggcggttttcaggatttgacgtgatga |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||| |||||||| ||||||| |
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|
| T |
11672017 |
atatttctttgatagtgaatgagccctataggaaacacaaacacatctcccttatgtagaactttactaaagtggcggttttctggatttgaagtgatga |
11672116 |
T |
|
| Q |
106 |
atccaacttctaacgtgccttcgagaacagtgaatatttcagtggcacggggatgtgagtgaggagggttaacaccccatggtgctatgtcgacacgagc |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
11672117 |
atccaacttctaacgtgccttcgagaacagtgaatatttcagtagcgcgaggatgtgagtgaggagggttaacaccccatggtgctatatcgacacgagc |
11672216 |
T |
|
| Q |
206 |
catggagattcctagt |
221 |
Q |
| |
|
||| ||||| |||||| |
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|
| T |
11672217 |
cattgagatccctagt |
11672232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 2 - 221
Target Start/End: Original strand, 11729257 - 11729476
Alignment:
| Q |
2 |
tccaatatttctttgatagtgaatgagccctataggaaacacaaacacatctcccttttgtagtactttcttaaagtggcggttttcaggatttgacgtg |
101 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| || |||| |||||||| |||||||| ||| |
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|
| T |
11729257 |
tccaatatttctttgatagtgaatgagctctataggaaacacaaacacatctcccttttgtagaactttcctagagtgccggttttctggatttgaagtg |
11729356 |
T |
|
| Q |
102 |
atgaatccaacttctaacgtgccttcgagaacagtgaatatttcagtggcacggggatgtgagtgaggagggttaacaccccatggtgctatgtcgacac |
201 |
Q |
| |
|
|||||||||||||| || |||||||| ||||||||||||||||| || ||||| ||||||||||||||||||||||| |||||||||||||| ||||||| |
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|
| T |
11729357 |
atgaatccaacttccaatgtgccttcaagaacagtgaatatttccgtagcacgaggatgtgagtgaggagggttaactccccatggtgctatatcgacac |
11729456 |
T |
|
| Q |
202 |
gagccatggagattcctagt |
221 |
Q |
| |
|
||||||| ||||| |||||| |
|
|
| T |
11729457 |
gagccattgagatccctagt |
11729476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 2 - 221
Target Start/End: Original strand, 11680900 - 11681122
Alignment:
| Q |
2 |
tccaatatttctttgatagtgaatgagccctataggaa---acacaaacacatctcccttttgtagtactttcttaaagtggcggttttcaggatttgac |
98 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||| ||||| ||||||||||||||| || ||||| |
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|
| T |
11680900 |
tccaatatttctttgatagtgaatgagacctataggaagaaacacaaacacatctcccttatgtagaactttacaaaagtggcggttttctgggtttgaa |
11680999 |
T |
|
| Q |
99 |
gtgatgaatccaacttctaacgtgccttcgagaacagtgaatatttcagtggcacggggatgtgagtgaggagggttaacaccccatggtgctatgtcga |
198 |
Q |
| |
|
|||||||||||||||||||| || ||||| ||||||||| ||||||| || ||||| |||||||||||||||| ||||||||||||||||||||| || | |
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|
| T |
11681000 |
gtgatgaatccaacttctaatgttccttcaagaacagtgcatatttcggtagcacgaggatgtgagtgaggagagttaacaccccatggtgctatatcaa |
11681099 |
T |
|
| Q |
199 |
cacgagccatggagattcctagt |
221 |
Q |
| |
|
||| |||||| ||||| |||||| |
|
|
| T |
11681100 |
cacaagccattgagatccctagt |
11681122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 2 - 221
Target Start/End: Complemental strand, 11693839 - 11693617
Alignment:
| Q |
2 |
tccaatatttctttgatagtgaatgagccctatagg---aaacacaaacacatctcccttttgtagtactttcttaaagtggcggttttcaggatttgac |
98 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||| ||||||||||||||||||||| ||||| ||||| ||||||||||||||| || ||||| |
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|
| T |
11693839 |
tccaatatttctttgatagtgaataagacctataggtagaaacacaaacacatctcccttatgtagaactttacaaaagtggcggttttctgggtttgaa |
11693740 |
T |
|
| Q |
99 |
gtgatgaatccaacttctaacgtgccttcgagaacagtgaatatttcagtggcacggggatgtgagtgaggagggttaacaccccatggtgctatgtcga |
198 |
Q |
| |
|
|||||||||||||||||||| || ||||| ||||||||| ||||||| || ||||| |||||||||||||||| ||||||||||||||||||||| || | |
|
|
| T |
11693739 |
gtgatgaatccaacttctaatgttccttcaagaacagtgcatatttcggtagcacgaggatgtgagtgaggagagttaacaccccatggtgctatatcaa |
11693640 |
T |
|
| Q |
199 |
cacgagccatggagattcctagt |
221 |
Q |
| |
|
|||||||||| ||||| |||||| |
|
|
| T |
11693639 |
cacgagccattgagatccctagt |
11693617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 2 - 219
Target Start/End: Complemental strand, 11712867 - 11712651
Alignment:
| Q |
2 |
tccaatatttctttgatagtgaatgagccctataggaaacacaaacacatctcccttttgtagtactttcttaaagtggcggttttcaggatttgacgtg |
101 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||| ||||| ||||| ||||||||||||||| || ||||| ||| |
|
|
| T |
11712867 |
tccaatatttctttgatagtgaatgagacctatag-aaacacaaacacatctctcttatgtagaactttacgaaagtggcggttttctgggtttgaagtg |
11712769 |
T |
|
| Q |
102 |
atgaatccaacttctaacgtgccttcgagaacagtgaatatttcagtggcacggggatgtgagtgaggagggttaacaccccatggtgctatgtcgacac |
201 |
Q |
| |
|
||||||||||||||||| || ||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||| |||| | |
|
|
| T |
11712768 |
atgaatccaacttctaatgttccttcaagaacagttaatatttcagtagcacgaggatgtgagtgaggagggttaacgccccaaggtgctatatcgatat |
11712669 |
T |
|
| Q |
202 |
gagccatggagattccta |
219 |
Q |
| |
|
||| ||| ||||| |||| |
|
|
| T |
11712668 |
gagtcattgagatcccta |
11712651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 7662109 - 7662329
Alignment:
| Q |
1 |
ttccaatatttctttgatagtgaatgagccctataggaaacacaaacacatctcccttttgtagtactttcttaaagtggcggttttcaggatttgacgt |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| || ||||| || |
|
|
| T |
7662109 |
ttcctatatttctttgatagtgaatgagtcctataggaaacacaaacacatctcccttttgtagaacttttctaaagtggcggttttccgggtttgaagt |
7662208 |
T |
|
| Q |
101 |
gatgaatccaacttctaacgtgccttcgagaacagtgaatatttcagtggcacggggatgtgagtgaggagggttaacaccccatggtgctatgtcgaca |
200 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||||||| || ||||| |||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
7662209 |
gatgaatccaacttctaaagtgccttcaagaacagtgaatatttcggtagcacgaggatgtgagtgaggagggttaattccccatggtgctatatcgaca |
7662308 |
T |
|
| Q |
201 |
cgagccatggagattcctagt |
221 |
Q |
| |
|
|||||||| ||||| |||||| |
|
|
| T |
7662309 |
cgagccattgagatccctagt |
7662329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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