View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19358_low_151 (Length: 237)
Name: NF19358_low_151
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_151 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 4843266 - 4843476
Alignment:
| Q |
12 |
atagggataaaatcgagataaaaaat-atggagtataaactcaaatgcaagttgaactattgtataaaaatatggtataagctagtgaaaaaataatata |
110 |
Q |
| |
|
||||||||||||| |||||||||||| || |||||||| ||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4843266 |
atagggataaaattgagataaaaaatgattgagtataagctcaaatgcaacttgaactaccgtataaaaa-atggtataagctagtgaaaaaataatata |
4843364 |
T |
|
| Q |
111 |
tgttggtgagaaaatgaacatcaccaaacaagccatttatacgtttatatgttagaagttattttgatgggatcgtaaaagatctttttcagcttaacta |
210 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||| |
|
|
| T |
4843365 |
tgttggtgaggaaatgaacatcaccaaacaagccatttatacgtttatatgttagaagttatttggatgagatcgtaaaggatctttttcagcttaacta |
4843464 |
T |
|
| Q |
211 |
gaggttatgagt |
222 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4843465 |
gaggttatgagt |
4843476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University