View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_152 (Length: 236)
Name: NF19358_low_152
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_152 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 21 - 221
Target Start/End: Complemental strand, 52925110 - 52924910
Alignment:
| Q |
21 |
ctattcacatattcttacagtgtctaaacttactcaaatcatgaattggatgaaataaacattactaagaagttgagagtaacagaaactaggtacctag |
120 |
Q |
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| T |
52925110 |
ctattcacatattcttacagtgtctaaacttactcaaatcatgaattggatgaaataaacattactaagaagttgagagtaacagaaactaggtacctgg |
52925011 |
T |
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| Q |
121 |
tagtatcaactttttcatcagattccacagcagtagcttcaaactcatcaatacctccagtataacttatgataggttcaccttcaacagttactatata |
220 |
Q |
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| T |
52925010 |
tagtatcaattttttcatcagattccacagcagtagcttcaaattcatcaatacctccagtataacttatgataggttcaccttcaacagttactatata |
52924911 |
T |
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| Q |
221 |
a |
221 |
Q |
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| T |
52924910 |
a |
52924910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 135 - 217
Target Start/End: Original strand, 16397583 - 16397665
Alignment:
| Q |
135 |
tcatcagattccacagcagtagcttcaaactcatcaatacctccagtataacttatgataggttcaccttcaacagttactat |
217 |
Q |
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|||||||||||||||||||| |||||||| |||||||||| ||||| |||||||||||||| |||||||||||||||||||| |
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| T |
16397583 |
tcatcagattccacagcagtggcttcaaatccatcaataccgccagtgtaacttatgataggctcaccttcaacagttactat |
16397665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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