View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19358_low_153 (Length: 235)
Name: NF19358_low_153
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_153 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 30 - 235
Target Start/End: Complemental strand, 14581125 - 14580920
Alignment:
| Q |
30 |
aataaataaataacctcgtaaatcttagtgcatgttcctataatattcctggtccaccagtgaccagtggtaagcaaccacttgcaaacagtacatgtca |
129 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||| |
|
|
| T |
14581125 |
aataaataaaaagcctcgtaaatcttagtgcatgttcctataatattcctggtccaccagtgaccagtggtaagtaaccacttgcaaacggtacatatca |
14581026 |
T |
|
| Q |
130 |
atcagccaccgtagcaccattatcattattacaatagatttcacaagttgagtcaaaaaacaaagttgaattcaaattttccttgtgcactataaaacca |
229 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14581025 |
aacagccaccgtagcaccattatcattattacaatagatttcacaagttgagtcaaaaaacaaagttgaattcaaattgtccttgtgcactataaaacca |
14580926 |
T |
|
| Q |
230 |
cacact |
235 |
Q |
| |
|
|||||| |
|
|
| T |
14580925 |
cacact |
14580920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 14542462 - 14542518
Alignment:
| Q |
30 |
aataaataaataacctcgtaaatcttagtgcatgttcctataatattcctggtccac |
86 |
Q |
| |
|
||||||||| |||||| ||||||| ||||||||||| ||||||||| ||||||||| |
|
|
| T |
14542462 |
aataaataataaacctcataaatctcagtgcatgttcatataatatttctggtccac |
14542518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 14542598 - 14542671
Alignment:
| Q |
162 |
aatagatttcacaagttgagtcaaaaaacaaagttgaattcaaattttccttgtgcactataaaaccacacact |
235 |
Q |
| |
|
||||||||||| || ||||||| ||||| | ||| || || ||||| || |||||||||||||| ||||||||| |
|
|
| T |
14542598 |
aatagatttcagaaattgagtccaaaaaaatagtagattttaaattgtctttgtgcactataaagccacacact |
14542671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University