View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19358_low_155 (Length: 235)
Name: NF19358_low_155
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_155 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-128; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 45131056 - 45131290
Alignment:
| Q |
1 |
atgaagttgctaaaatttgtgcttctggtttggctgataatcttcactttgagtccatcagttttaattggtgacctacaatgttgcatcaatgtacatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45131056 |
atgaagttgctaaaatttgtgcttctggtttggctgataatcttcactttgagtccatcagttttaattggtgacctacaatgttgcatcaatgtacatg |
45131155 |
T |
|
| Q |
101 |
tcgtatatatatgccttctaccatctctaaaatgtacgtgttgattcttctatattataattaggtaatgtgaagaagtgcaattgcacatgtgtgcttg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
45131156 |
tcgtatatatatgccttctaccatctctaaaatgtacgtgttgattcttctatattataattaggcaatgtgaagaagtgcaattgcacatgtgtgcttg |
45131255 |
T |
|
| Q |
201 |
tacatgaattaatgtctttttcattattaggccat |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
45131256 |
tacatgaattaatgtctttttcattattaggccat |
45131290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 45114155 - 45114363
Alignment:
| Q |
1 |
atgaagttgctaaaatttgtgcttctggtttggctgataatcttcactttgagtccatcagttttaattggtgacctacaatgttgcatcaatgtacatg |
100 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||||||||||||| || || ||||| |||||||||||| ||||||||| ||||| |
|
|
| T |
45114155 |
atgaagttgctagaatatgtgcttctggtttggctgataatcttcacttcgaatcaatcagctttaattggtgatctacaatgt-----------acatg |
45114243 |
T |
|
| Q |
101 |
tcgtatatatatgccttctaccatc-tctaaaatgtacgtgttgattcttctat---attataattaggtaat-gtgaagaagtgcaattgcacatgtgt |
195 |
Q |
| |
|
||| ||||||||||||| ||| ||| ||||||| || | ||||||||| ||||| |||||||||||| ||| ||||| ||||||||||||||| |||| |
|
|
| T |
45114244 |
tcgcatatatatgccttttactatcctctaaaacgttcatgttgattcctctatgttattataattaggcaatcgtgaacaagtgcaattgcacaagtgt |
45114343 |
T |
|
| Q |
196 |
gcttgtacatgaattaatgt |
215 |
Q |
| |
|
|| ||||||||||||||||| |
|
|
| T |
45114344 |
gcctgtacatgaattaatgt |
45114363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 197
Target Start/End: Original strand, 45131291 - 45131319
Alignment:
| Q |
169 |
tgtgaagaagtgcaattgcacatgtgtgc |
197 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
45131291 |
tgtgaagaagtgcaattgcacatgtgtgc |
45131319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University