View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_16 (Length: 538)
Name: NF19358_low_16
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-116; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 8061494 - 8061726
Alignment:
| Q |
18 |
ctttaggacatgttgtcggagttctttgatatagaatgcacatctattatgaagcatatcattggatgatacttaacaaacaatagtttcctaaatgtac |
117 |
Q |
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| T |
8061494 |
ctttaggacattttgtcggagttctttgatatagaatgcacatctattatgaagcatatctttggatgatacttaacaaacaatagtttcctaaatgtac |
8061593 |
T |
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| Q |
118 |
tatccacataaaagaaagcaagaaatagcttaaagttaagataatggcttagtttagtttgaatcacaaaaatgattctattatgaagcttaacattcaa |
217 |
Q |
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| T |
8061594 |
tatccacataaaagaaagcaagaaatagcttaaagttaagataatggcttagtttagtttgaatcacaaaaatgattctattatgaagcatatcattcaa |
8061693 |
T |
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| Q |
218 |
tgatacttatatttgacattatctgcccttata |
250 |
Q |
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| T |
8061694 |
tgatgcttatatttgacattatctgcccttata |
8061726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 385 - 532
Target Start/End: Original strand, 8067523 - 8067670
Alignment:
| Q |
385 |
ttcaagtctctctcttattttctatcgaagcgaccgatcatgtgtgtgctctcaattctttttgtttgtacgagagaacctaacagagatatcaaatcgg |
484 |
Q |
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| T |
8067523 |
ttcaagtctctctcttattttctatcgaagcgaccgatcatgtgtgtgctctcaattctttttgtttgtacgagagaacctaacagagatatcaaatcgg |
8067622 |
T |
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| Q |
485 |
acaaagaccaacacaatatcataaccgttgttcatgacttctctgttc |
532 |
Q |
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| T |
8067623 |
acaaagaccaacacaatatcataaccgttgttcatgacttctctgttc |
8067670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 284 - 376
Target Start/End: Original strand, 8061760 - 8061852
Alignment:
| Q |
284 |
ataatggaagttgggaatttcatttgacattatgtgactttcataagacactagttttggacagacatgtttaaaaaataattggcataaact |
376 |
Q |
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| T |
8061760 |
ataatggaatttgggaatttcatttgacattatgtgactttcataagacactagttttggacagacatgtttaaaaaataattggcataaact |
8061852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 64 - 189
Target Start/End: Complemental strand, 7930946 - 7930820
Alignment:
| Q |
64 |
ttatgaagcatatcattggatgatacttaacaaa-caatagtttcctaaatgtactatccacataaaagaaagcaagaaatagcttaaagttaagataat |
162 |
Q |
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| T |
7930946 |
ttatgaagcatgtcattcaattatacttgacaaaacaacagtttcctaatt-taatatccacataaaagaaaagaagaaatggcttaaagttaagattat |
7930848 |
T |
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| Q |
163 |
ggcttagtttagttt-gaatcacaaaaa |
189 |
Q |
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| T |
7930847 |
ggcttagtttagtttagaatcacaaaaa |
7930820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 415 - 466
Target Start/End: Original strand, 47140061 - 47140115
Alignment:
| Q |
415 |
cgaccgatcatgtgtgtg---ctctcaattctttttgtttgtacgagagaaccta |
466 |
Q |
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| T |
47140061 |
cgactgatcatgtgtgtgtgactctcaattcttcttgtttgtgcgagagaaccta |
47140115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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