View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_164 (Length: 221)
Name: NF19358_low_164
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_164 |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 54 - 210
Target Start/End: Original strand, 3905317 - 3905473
Alignment:
| Q |
54 |
actatcggatttattgattatcacaatcgtggtgcttggctccatcttgtttcgacgtcgatgaataaccaaccaaattcatacctcccaaaagcaaaga |
153 |
Q |
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| T |
3905317 |
actatcgaatttattgattatcacaatcgtggtgcttggctccatcttgtttcgacgtcgatgaataaccaaccaaattcatacctcccaaaagcaaaga |
3905416 |
T |
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| Q |
154 |
aagatatcacattccactattccatttcattaagcagatatatatgttgtatatttt |
210 |
Q |
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| T |
3905417 |
aagatatcacattccactattccatttcattaagcagatatatatgttgtatatttt |
3905473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 55
Target Start/End: Original strand, 3905263 - 3905293
Alignment:
| Q |
25 |
gataaagagggatagatgtggtgcttcaaac |
55 |
Q |
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| T |
3905263 |
gataaagagggatagatgtggtgcttcaaac |
3905293 |
T |
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