View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_172 (Length: 214)
Name: NF19358_low_172
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_172 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 30635827 - 30635615
Alignment:
| Q |
1 |
caccattattatttttataactttctttctctnnnnnnnnnctaggaaactttgatccgaatagcaattaatcaagatcatactagactcaggagaatat |
100 |
Q |
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| T |
30635827 |
caccattattatttttataactttctttctctaaaaaaaa-ctaggaaactttgatctgaacagcaattaatcaagatcatactagactcaggagaatat |
30635729 |
T |
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| Q |
101 |
taatttcaaaatcaaactagttgcagtcgaacacatgcattatgcatgacacattttttatttaaaaatgcaatgaatcagaggctagaatataaaaatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
30635728 |
taatttcaaaatcaaactagttgcagtcgaacacatgcattatgcatgacacattttttatttaaaaatacaatgaatcagaggctagaatatagaaatc |
30635629 |
T |
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| Q |
201 |
ttatattatttact |
214 |
Q |
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|||||||||||||| |
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| T |
30635628 |
ttatattatttact |
30635615 |
T |
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