View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_174 (Length: 210)
Name: NF19358_low_174
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_174 |
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| [»] scaffold0090 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 1e-67; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 16 - 153
Target Start/End: Original strand, 13854561 - 13854698
Alignment:
| Q |
16 |
aatactcgaggcaacaaataacttctctttcgacaataagctcggggaaggtggttttggaccagtatataaggtaaacttacaacatttctggttaagt |
115 |
Q |
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| T |
13854561 |
aatactcgaggcaacaaataacttctcttttgacaataagctcggggaaggtggttttggaccagtatataaggtaaacttacaacatttctggttaagt |
13854660 |
T |
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| Q |
116 |
gaataaaatagaaatattttttataaaacgatttcaac |
153 |
Q |
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| T |
13854661 |
gaataaaatagaaatattttttataaaactatttcaac |
13854698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 94
Target Start/End: Original strand, 1049905 - 1049943
Alignment:
| Q |
56 |
ctcggggaaggtggttttggaccagtatataaggtaaac |
94 |
Q |
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| T |
1049905 |
ctcggagaaggtggctttggaccagtatataaggtaaac |
1049943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 94
Target Start/End: Original strand, 1107024 - 1107065
Alignment:
| Q |
53 |
aagctcggggaaggtggttttggaccagtatataaggtaaac |
94 |
Q |
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| T |
1107024 |
aagcttggagaaggtggttttggaccggtatataaggtaaac |
1107065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 94
Target Start/End: Original strand, 1076827 - 1076859
Alignment:
| Q |
62 |
gaaggtggttttggaccagtatataaggtaaac |
94 |
Q |
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| T |
1076827 |
gaaggtggctttggaccagtatataaggtaaac |
1076859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 94
Target Start/End: Original strand, 1090633 - 1090665
Alignment:
| Q |
62 |
gaaggtggttttggaccagtatataaggtaaac |
94 |
Q |
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| T |
1090633 |
gaaggtggctttggaccagtatataaggtaaac |
1090665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 94
Target Start/End: Complemental strand, 1300193 - 1300161
Alignment:
| Q |
62 |
gaaggtggttttggaccagtatataaggtaaac |
94 |
Q |
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| T |
1300193 |
gaaggtggctttggaccagtatataaggtaaac |
1300161 |
T |
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Target: scaffold0090 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: scaffold0090
Description:
Target: scaffold0090; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 8938 - 8848
Alignment:
| Q |
16 |
aatactcgaggcaacaaataacttctctttcgacaataagctcggggaaggtggttttggaccagtatataaggtaaacttacaacatttc |
106 |
Q |
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| T |
8938 |
aatactcaacgcaacaaaaaacttctcttttgataacaagctcggtgaaggtggttttggaccggtatacaaggtaaacttacaacatttc |
8848 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 28432599 - 28432658
Alignment:
| Q |
32 |
aataacttctctttcgacaataagctcggggaaggtggttttggaccagtatataaggta |
91 |
Q |
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| T |
28432599 |
aataacttctcaatcaacaataaactcggtgaaggtggttttggaccggtatacaaggta |
28432658 |
T |
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