View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_21 (Length: 495)
Name: NF19358_low_21
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 453; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 11 - 479
Target Start/End: Complemental strand, 34764042 - 34763574
Alignment:
| Q |
11 |
caaaggcacttcgccatcttccaaatccaccaagccctaaaccacgtcttccattcataggtcatcttcatcttttggataacccacttcttcaccacac |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34764042 |
caaaggcacttcgccatcttccaaatccaccaagccctaaaccacgtcttcctttcattggtcatcttcatcttttggataacccacttcttcaccacac |
34763943 |
T |
|
| Q |
111 |
tcttatcaagttaggaaagcgttatggacctttgtacactctttactttggttccatgcctaccgttgttgcatccactcctgacttgtttaaacttttc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34763942 |
tcttatcaagttaggaaagcgttatggacctttgtacactctttactttggttccatgcctaccgttgttgcatccactcctgacttgtttaaacttttc |
34763843 |
T |
|
| Q |
211 |
cttcaaacccatgaagctacttcctttaacacaagattccaaacctctgctattagtcgtcttacctatgataattctgttgctatggttccatttgcac |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
34763842 |
cttcaaacccatgaagctacttcctttaacacaagattccaaacctctgctattagtcgtcttacctatgaaaaatctgttgctatggttccatttgcac |
34763743 |
T |
|
| Q |
311 |
cttattggaagtttattagaaagcttatcatgaacgacttgctcaacgccaccactgttaacaaattgaggccattgaggagccgagaaatccttaaggt |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34763742 |
cttattggaagtttattagaaagcttatcatgaacgacttgctcaacgccaccactgttaacaaattgaggccattgaggagccgagaaatccttaaggt |
34763643 |
T |
|
| Q |
411 |
tcttaaggtcatggctaatagtgctgaaactcaacagccacttgatgtcactgaggagcttctcaagtg |
479 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34763642 |
tcttaaggtcatggctaatagtgctgaaactcaacagccacttgatgtcactgaggagcttctcaagtg |
34763574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 11 - 479
Target Start/End: Original strand, 34780070 - 34780538
Alignment:
| Q |
11 |
caaaggcacttcgccatcttccaaatccaccaagccctaaaccacgtcttccattcataggtcatcttcatcttttggataacccacttcttcaccacac |
110 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
34780070 |
caaaggctcttcgccaccttccaaatccaccaagccctaaaccacgtcttccattcataggtcatcttcaccttttggataacccacttcttcaccacac |
34780169 |
T |
|
| Q |
111 |
tcttatcaagttaggaaagcgttatggacctttgtacactctttactttggttccatgcctaccgttgttgcatccactcctgacttgtttaaacttttc |
210 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34780170 |
tcttatcaagttaggaaagcgttatggccctttgtacactctttactttggttccatgcctaccgttgttgcatccactcctgacttgtttaaacttttc |
34780269 |
T |
|
| Q |
211 |
cttcaaacccatgaagctacttcctttaacacaagattccaaacctctgctattagtcgtcttacctatgataattctgttgctatggttccatttgcac |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34780270 |
cttcaaacccatgaagctacttcctttaacacaagattccaaacctctgctattagtcgtcttacctatgataattctgttgctatggttccatttgcac |
34780369 |
T |
|
| Q |
311 |
cttattggaagtttattagaaagcttatcatgaacgacttgctcaacgccaccactgttaacaaattgaggccattgaggagccgagaaatccttaaggt |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34780370 |
cttattggaagtttattagaaagcttatcatgaacgacttgctcaacgccaccactgttaacaaattgaggccattgaggagccgagaaatccttaaggt |
34780469 |
T |
|
| Q |
411 |
tcttaaggtcatggctaatagtgctgaaactcaacagccacttgatgtcactgaggagcttctcaagtg |
479 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34780470 |
tcttaaggtcatggctaatagtgctgaaactcaacagccacttgatgtcactgaggagcttctcaagtg |
34780538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 11 - 479
Target Start/End: Complemental strand, 34756066 - 34755598
Alignment:
| Q |
11 |
caaaggcacttcgccatcttccaaatccaccaagccctaaaccacgtcttccattcataggtcatcttcatcttttggataacccacttcttcaccacac |
110 |
Q |
| |
|
||||||| |||||||| ||||| ||||| || || || ||||| |||||||||| ||| ||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
34756066 |
caaaggctcttcgccaccttcccaatcctccgagtcccaaacctcgtcttccatccattggtcatcttcaccttttggataaccctcttcttcaccacac |
34755967 |
T |
|
| Q |
111 |
tcttatcaagttaggaaagcgttatggacctttgtacactctttactttggttccatgcctaccgttgttgcatccactcctgacttgtttaaacttttc |
210 |
Q |
| |
|
|||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||| ||||||| || || ||||||||||||||||||||| |
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|
| T |
34755966 |
tcttatcaagttaggagaacgttatggccctttgtacactctttactttggttccatgcctaccattgttgcctcaacccctgacttgtttaaacttttc |
34755867 |
T |
|
| Q |
211 |
cttcaaacccatgaagctacttcctttaacacaagattccaaacctctgctattagtcgtcttacctatgataattctgttgctatggttccatttgcac |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| || |
|
|
| T |
34755866 |
cttcaaacccatgaagctacttcctttaacacaaggttccaaacctctgctattagtcgtcttacctatgacaactctgttgctatggttccatttggac |
34755767 |
T |
|
| Q |
311 |
cttattggaagtttattagaaagcttatcatgaacgacttgctcaacgccaccactgttaacaaattgaggccattgaggagccgagaaatccttaaggt |
410 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||| |||| |||||| |
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|
| T |
34755766 |
cttactggaagtttattagaaagcttatcatgaacgacctgctcaacgccaccactattaacaagttgaggccattgaggagccgagagatccgtaaggt |
34755667 |
T |
|
| Q |
411 |
tcttaaggtcatggctaatagtgctgaaactcaacagccacttgatgtcactgaggagcttctcaagtg |
479 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34755666 |
tcttaaggtcatggctaatagtgctgaaactcaacagccacttaatgtcactgaggagcttctcaagtg |
34755598 |
T |
|
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