View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_low_22 (Length: 489)
Name: NF19358_low_22
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 35 - 410
Target Start/End: Original strand, 19950756 - 19951135
Alignment:
| Q |
35 |
gtttgatttcgttcccaaatcgatgaattattaactttgatcttgatgttcgtcatttcggtttatgcttcaaatcattgttttcctnnnnnnnnn-ttg |
133 |
Q |
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| T |
19950756 |
gtttgattgcgttcccaaatcgatgaattattaactttgatcttgatgttcgtcatttcggtttatgattcaaatcattgttttcctaaaaaaaaaattg |
19950855 |
T |
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| Q |
134 |
aaggaaaatcattgtttttcttaattaaaatgatatatattttgaaaagcaaatcattgttttttg-tatggtcata--gggacatgcaattgattacca |
230 |
Q |
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| T |
19950856 |
aaggaaaatcattgtttttcttaattaaaatgatatatattttgaaaagcaaatcattgttttttggtatggtcatatagggacatgcaattgattacca |
19950955 |
T |
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| Q |
231 |
actatttgacaccacacatacacatttccttcaactacaaattaacaaaccgaccatgtgaatttcacgttaatttgtgtgtaaactcaacaatccataa |
330 |
Q |
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| T |
19950956 |
actatttgacaccacacatacacatttccttcaactacaaattaacaaaccgaccatgtgaatttcacgttaatttgtgtgtaaactcaacaatccataa |
19951055 |
T |
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| Q |
331 |
caattaaagaagagaattacatttggtggtggagctagggttcatagtgcaccacatggcactacttaaagccatggacc |
410 |
Q |
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| T |
19951056 |
caattaaagaagagaattacatttggtggtggagctagggttcatagtgcaccacatggcactacttaaagccatggacc |
19951135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 427 - 477
Target Start/End: Original strand, 19951129 - 19951183
Alignment:
| Q |
427 |
atggacctcaacttcaaccat----gaagggttggtaatatcactatcggagtat |
477 |
Q |
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| T |
19951129 |
atggacctcaacttcaaccataaagaaagggttggtaatatcactatcggagtat |
19951183 |
T |
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